RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA874604 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2126784 2126784 PRJNA874604_P_NODE_17542_length_425_cov_1.161932_g17190_i0 PRJNA874604 17542 425 1.161932 4.938211 Dictyostelium purpureum 5786 Evosea other_Eukaryota 292 2.22e-74   NTclustered gi|330818907|ref|XM_003291484.1| 5786 g17190 i0 80.253 11.4235294117647 395 72 92 5 5 396 24 415 Dictyostelium purpureum ribosomal protein L10E (DICPUDRAFT_92700), mRNA blastn 4855 292 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
10166884 10166884 PRJNA874604_P_NODE_85868_length_245_cov_2.226744_g85516_i0 PRJNA874604 85868 245 2.226744 5.4555228 Dictyostelium 5782 Evosea other_Eukaryota 193 1.25e-44   NTclustered gi|790953|dbj|D50338.1| 44689 g85516 i0 84.896 61.3632653061225 192 27 78 2 54 244 2872 2682 Dictyostelium discoideum DNA for ribosomal protein, complete cds blastn 15034 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
12330937 12330937 PRJNA874604_P_NODE_39730_length_310_cov_1.299578_g39378_i0 PRJNA874604 39730 310 1.299578 4.0286918 Didymium bahiense 289975 Evosea other_Eukaryota 551 2.339999999999999e-152   NTclustered gi|2528966063|gb|OR214927.1| 289975 g39378 i0 98.71 87.5870967741936 310 4 100 0 1 310 338 29 Didymium bahiense voucher HFJAU14001 small subunit ribosomal RNA gene, partial sequence blastn 27152 551 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium bahiense
13605427 13605427 PRJNA874604_P_NODE_36731_length_319_cov_1.878049_g36379_i0 PRJNA874604 36731 319 1.878049 5.99097631 Dictyostelium discoideum 44689 Evosea other_Eukaryota 176 1.7e-39   NTclustered gi|66826022|ref|XM_641274.1| 352472 g36379 i0 86.709 1.72100313479624 158 21 50 0 40 197 43 200 Dictyostelium discoideum AX4 S60 ribosomal protein L36a (rpl36a) mRNA, complete cds blastn 549 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13606329 13606329 PRJNA874604_P_NODE_84251_length_246_cov_0.890173_g83899_i0 PRJNA874604 84251 246 0.890173 2.18982558 Entamoeba histolytica 5759 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|416173|emb|X70311.1| 5759 g83899 i0 100 0.117886178861789 29 0 12 0 58 86 1791 1819 E.histolytica extrachromosomal rDNA fragment blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
16540982 16540982 PRJNA874604_P_NODE_9933_length_540_cov_1.372591_g9585_i0 PRJNA874604 9933 540 1.372591 7.4119914 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 460 7.439999999999998e-125   NTclustered gi|511083902|dbj|AK419160.1| 5759 g9585 i0 83.707 90.9537037037037 491 76 91 4 6 494 517 29 Entamoeba histolytica cDNA clone: Xeh-003B20, actin, complete cds, strain: HM-1:IMSS blastn 49115 462 0.995670995670996 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
23804561 23804561 PRJNA874604_P_NODE_68259_length_251_cov_1.730337_g67907_i0 PRJNA874604 68259 251 1.730337 4.34314587 Didymium megalosporum 289980 Evosea other_Eukaryota 187 5.98e-43   NTclustered gi|529177860|gb|KC814167.1| 289980 g67907 i0 80.08 18.8207171314741 251 50 100 0 1 251 741 491 Didymium megalosporum alpha-tubulin gene, partial cds blastn 4724 187 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium megalosporum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;