RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA874604 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2513262 2513262 PRJNA874604_P_NODE_16002_length_441_cov_9.701087_g15650_i0 PRJNA874604 16002 441 9.701087 42.78179367 Ripella 1217112 Discosea other_Eukaryota 693 0   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g15650 i0 95.034 100.433106575964 443 18 100 4 1 441 1044 604 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 44291 695 0.997122302158273 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
4679829 4679829 PRJNA874604_P_NODE_1784_length_1117_cov_3.204981_g1576_i0 PRJNA874604 1784 1117 3.204981 35.79963777 Paramoeba branchiphila 308475 Discosea other_Eukaryota 1144 0   NTclustered gi|226347442|gb|FJ807261.1| 308475 g1576 i0 87.238 67.2202327663384 1003 126 90 2 116 1117 1202 201 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 75085 1144 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
7230186 7230186 PRJNA874604_P_NODE_49466_length_285_cov_1.433962_g49114_i0 PRJNA874604 49466 285 1.433962 4.0867917 Paramoeba perurans 437603 Discosea other_Eukaryota 172 1.94e-38   NTclustered gi|145386784|gb|EF216909.1| 437603 g49114 i0 77.855 27.8315789473684 289 57 100 7 1 285 45 330 Neoparamoeba perurans strain GD-HAC/1 28S large subunit ribosomal RNA gene, partial sequence blastn 7932 172 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
9779187 9779187 PRJNA874604_P_NODE_11008_length_517_cov_7.601351_g10657_i0 PRJNA874604 11008 517 7.601351 39.29898467 Vannella sp. KDN1 2081467 Discosea other_Eukaryota 813 0   NTclustered gi|1770511914|dbj|LC368142.1| 2081467 g10657 i0 95.038 101.075435203095 524 14 100 10 1 517 1153 1671 Vannella sp. KDN1 gene for 18S ribosomal RNA, partial sequence blastn 52256 813 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. KDN1
17431150 17431150 PRJNA874604_P_NODE_96874_length_242_cov_0.911243_g96522_i0 PRJNA874604 96874 242 0.911243 2.20520806 Vannella ebro 207334 Discosea other_Eukaryota 283 7.1e-72   NTclustered gi|33946344|gb|AY294151.1| 207334 g96522 i0 90.278 83.8636363636364 216 21 89 0 27 242 16 231 Vannella ebro actin mRNA, complete cds blastn 20295 283 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella ebro
21254087 21254087 PRJNA874604_P_NODE_50117_length_284_cov_1.170616_g49765_i0 PRJNA874604 50117 284 1.170616 3.32454944 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 444 3.6999999999999986e-120   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g49765 i0 94.81 43.0774647887324 289 8 100 7 1 284 102 388 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 12234 444 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
25078906 25078906 PRJNA874604_P_NODE_8980_length_563_cov_11.808163_g8633_i0 PRJNA874604 8980 563 11.808163 66.47995769 Ripella sp. 805 1217113 Discosea other_Eukaryota 881 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g8633 i0 95.512 99.0941385435169 557 16 98 9 11 563 1 552 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55790 881 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;