RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA874604 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8505501 8505501 PRJNA874604_P_NODE_7787_length_598_cov_2.407619_g7445_i0 PRJNA874604 7787 598 2.407619 14.39756162 Roseiflexus sp. RS-1 357808 Bacteria Bacteria 250 1.96e-61   NTclustered gi|470481958|ref|NR_076505.1| 357808 g7445 i0 75.29 214.650501672241 603 108 98 33 1 585 622 43 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 128361 250 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
13606602 13606602 PRJNA874604_P_NODE_97291_length_242_cov_0.911243_g96939_i0 PRJNA874604 97291 242 0.911243 2.20520806 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 213 9.45e-51   NTclustered gi|2874253882|emb|OY969938.1| 1672391 g96939 i0 85.366 76.0371900826446 205 30 85 0 37 241 2064615 2064411 MAG: uncultured Chloroflexia bacterium isolate MFD02416.bin.c.1 genome assembly, chromosome: 1 blastn 18401 213 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
23804776 23804776 PRJNA874604_P_NODE_77999_length_248_cov_0.880000_g77647_i0 PRJNA874604 77999 248 0.88 2.1824 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 80.5 1.03e-10   NTclustered gi|2575820107|emb|OY730226.1| 2026734 g77647 i0 79.167 0.596774193548387 120 21 48 4 1 118 785194 785077 MAG: Dehalococcoidia bacterium isolate c007961a-0c0c-4106-a690-a869d044ef0b genome assembly, chromosome: 1 blastn 148 80.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;