RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA874604 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22529362 22529362 PRJNA874604_P_NODE_81578_length_247_cov_0.885057_g81226_i0 PRJNA874604 81578 247 0.885057 2.18609079 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 246 9.54e-61   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g81226 i0 86.026 54.6234817813765 229 32 93 0 17 245 2375636 2375864 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 13492 246 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
25078244 25078244 PRJNA874604_P_NODE_59200_length_267_cov_1.587629_g58848_i0 PRJNA874604 59200 267 1.587629 4.23896943 Candidatus Nitrosymbiomonas proteolyticus 2608984 Bacteria Bacteria 235 2.26e-57   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g58848 i0 86.449 2.40449438202247 214 29 80 0 54 267 1827891 1827678 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 642 235 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;