RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA874604 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2513352 2513352 PRJNA874604_P_NODE_28462_length_351_cov_2.604317_g28110_i0 PRJNA874604 28462 351 2.604317 9.14115267 root 1 Root_unresolved Root_unresolved 638 1.9999999999999996e-178   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g28110 i0 99.43 58.8945868945869 351 2 100 0 1 351 2263 1913 Moloney murine leukemia virus, complete genome blastn 20672 638 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8891035 8891035 PRJNA874604_P_NODE_57887_length_270_cov_1.005076_g57535_i0 PRJNA874604 57887 270 1.005076 2.7137052 root 1 Root_unresolved Root_unresolved 431 2.719999999999999e-116   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g57535 i0 97.984 85.2185185185185 248 5 100 0 23 270 2000 2247 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 23009 431 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15265817 15265817 PRJNA874604_P_NODE_35572_length_323_cov_1.692000_g35220_i0 PRJNA874604 35572 323 1.692 5.46516 root 1 Root_unresolved Root_unresolved 586 6.72e-163   NTclustered gi|1431162560|gb|EU075332.2| 11786 g35220 i0 99.381 16.5603715170279 323 2 100 0 1 323 4949 4627 Mutant Murine leukemia virus clone 8-6w_c2 gag-pro-pol polyprotein gene, complete cds blastn 5349 586 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17815236 17815236 PRJNA874604_P_NODE_19534_length_407_cov_1.248503_g19182_i0 PRJNA874604 19534 407 1.248503 5.08140721 root 1 Root_unresolved Root_unresolved 747 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g19182 i0 99.754 100 407 1 100 0 1 407 2707 2301 Moloney murine leukemia virus, complete genome blastn 40700 747 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;