RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA874604 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5955821 5955821 PRJNA874604_P_NODE_75325_length_249_cov_0.875000_g74973_i0 PRJNA874604 75325 249 0.875 2.17875 Cetobacterium somerae 188913 Bacteria Bacteria 455 1.47e-123   NTclustered gi|2201062197|gb|CP092519.1| 188913 g74973 i0 99.598 10.570281124498 249 1 100 0 1 249 408696 408448 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 2632 455 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
8505389 8505389 PRJNA874604_P_NODE_72167_length_250_cov_0.870056_g71815_i0 PRJNA874604 72167 250 0.870056 2.17514 Fusobacterium polymorphum 76857 Bacteria Bacteria 455 1.48e-123   NTclustered gi|2706071841|gb|CP077111.1| 76857 g71815 i0 100 98.812 246 0 98 0 5 250 1684000 1684245 Fusobacterium polymorphum strain KCOM1275 chromosome, complete genome blastn 24703 455 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
11441796 11441796 PRJNA874604_P_NODE_53489_length_278_cov_0.946341_g53137_i0 PRJNA874604 53489 278 0.946341 2.63082798 Fusobacterium 848 Bacteria Bacteria 514 2.7199999999999996e-141   NTclustered gi|2445153921|gb|CP117797.1| 851 g53137 i0 100 490.607913669065 278 0 100 0 1 278 469784 470061 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 136389 514 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17815617 17815617 PRJNA874604_P_NODE_63994_length_259_cov_1.241935_g63642_i0 PRJNA874604 63994 259 1.241935 3.21661165 Cetobacterium 180162 Bacteria Bacteria 473 4.25e-129   NTclustered gi|2865368125|gb|CP122294.1| 188913 g63642 i0 99.614 531.853281853282 259 1 100 0 1 259 279338 279596 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 137750 473 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
19978610 19978610 PRJNA874604_P_NODE_46956_length_290_cov_1.331797_g46604_i0 PRJNA874604 46956 290 1.331797 3.8622113 Leptotrichia wadei 157687 Bacteria Bacteria 536 6.079999999999999e-148   NTclustered gi|1708579735|dbj|AP019837.1| 157687 g46604 i0 100 4 290 0 100 0 1 290 22845 23134 Leptotrichia wadei JMUB3934 plasmid pJMUB3934p2 DNA, complete genome blastn 1160 536 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
22528970 22528970 PRJNA874604_P_NODE_62478_length_261_cov_2.297872_g62126_i0 PRJNA874604 62478 261 2.297872 5.99744592 Fusobacterium polymorphum 76857 Bacteria Bacteria 483 7.12e-132   NTclustered gi|2078819084|gb|CP071096.1| 76857 g62126 i0 100 99.911877394636 261 0 100 0 1 261 2199794 2199534 Fusobacterium polymorphum strain THCT7E2 chromosome, complete genome blastn 26077 483 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;