RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA874604 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2126972 2126972 PRJNA874604_P_NODE_29802_length_345_cov_1.724265_g29450_i0 PRJNA874604 29802 345 1.724265 5.94871425 Thecamonas trahens 529818 Root_unresolved Root_unresolved 52.8 0.033   NTclustered gi|923131822|ref|XM_013903923.1| 461836 g29450 i0 100 0.0811594202898551 28 0 8 0 112 139 563 590 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_02458), partial mRNA blastn 28 52.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
3402782 3402782 PRJNA874604_P_NODE_51903_length_280_cov_3.067633_g51551_i0 PRJNA874604 51903 280 3.067633 8.5893724 Thecamonas trahens 529818 Root_unresolved Root_unresolved 124 5.39e-24   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g51551 i0 79.581 1.175 191 25 65 10 1 181 384 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 329 124 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5955506 5955506 PRJNA874604_P_NODE_59105_length_267_cov_2.180412_g58753_i0 PRJNA874604 59105 267 2.180412 5.82170004 Thecamonas trahens 529818 Root_unresolved Root_unresolved 315 2.82e-81   NTclustered gi|923133736|ref|XM_013904880.1| 461836 g58753 i0 88.716 96.6591760299626 257 29 96 0 11 267 389 133 Thecamonas trahens ATCC 50062 ADP-ribosylation factor 1 (AMSG_02990), mRNA blastn 25808 315 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
25077453 25077453 PRJNA874604_P_NODE_14240_length_464_cov_1.877238_g13888_i0 PRJNA874604 14240 464 1.877238 8.71038432 Thecamonas trahens 529818 Root_unresolved Root_unresolved 281 5.28e-71   NTclustered gi|923136081|ref|XM_013906052.1| 461836 g13888 i0 79.412 63.1400862068966 408 76 87 8 5 408 24 427 Thecamonas trahens ATCC 50062 60S ribosomal protein L10-B (AMSG_01453), mRNA blastn 29297 281 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;