RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA870096 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4678476 4678476 PRJNA870096_S_NODE_41804_length_274_cov_2.095238_g40140_i0 PRJNA870096 41804 274 2.095238 5.74095212 Copromyxa protea 931554 Tubulinea other_Eukaryota 219 2.3399999999999994e-52   NTclustered gi|508737347|dbj|AB766053.1| 931554 g40140 i0 85.577 2.97080291970803 208 30 76 0 67 274 1 208 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 814 219 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
11053582 11053582 PRJNA870096_S_NODE_19869_length_406_cov_76.776860_g18213_i0 PRJNA870096 19869 406 76.77686 311.7140516 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 691 0   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g18213 i0 99.475 66.8374384236453 381 1 94 1 26 406 588 967 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 27136 691 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
11053799 11053799 PRJNA870096_S_NODE_42149_length_273_cov_1.560870_g40485_i0 PRJNA870096 42149 273 1.56087 4.2611751 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 195 3.94e-45   NTclustered gi|1042160952|dbj|LC102283.1| 1789826 g40485 i0 81.07 85.4249084249084 243 46 89 0 6 248 515 273 Copromyxa sp. MK-2016 mitochondrial COXI gene, cytochrome oxidase subunit I, partial sequence, strain: ZEB1 blastn 23321 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
14878652 14878652 PRJNA870096_S_NODE_87832_length_187_cov_32.840278_g86168_i0 PRJNA870096 87832 187 32.840278 61.41131986 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 340 3.0499999999999998e-89   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g86168 i0 99.465 98.9411764705882 187 1 100 0 1 187 1127 941 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 18502 340 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
17428430 17428430 PRJNA870096_S_NODE_5314_length_810_cov_13.572360_g4132_i0 PRJNA870096 5314 810 13.57236 109.936116 Copromyxa protea 931554 Tubulinea other_Eukaryota 431 8.949999999999998e-116   NTclustered gi|508737347|dbj|AB766053.1| 931554 g4132 i0 79.967 1.47407407407407 599 108 73 11 1 593 797 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 1194 431 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18701237 18701237 PRJNA870096_S_NODE_18175_length_426_cov_6.436031_g16523_i0 PRJNA870096 18175 426 6.436031 27.41749206 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 420 9.77e-113   NTclustered gi|33946358|gb|AY294158.1| 239731 g16523 i0 85.969 86.31220657277 392 55 92 0 26 417 712 1103 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 36769 420 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
20363677 20363677 PRJNA870096_S_NODE_4356_length_894_cov_34.159812_g3314_i0 PRJNA870096 4356 894 34.159812 305.38871928 Saccamoeba 136463 Tubulinea other_Eukaryota 1218 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g3314 i0 98.972 59.1733780760626 681 6 76 1 189 869 1808 1129 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 52901 1218 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;