RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA870096 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8502806 8502806 PRJNA870096_S_NODE_20907_length_396_cov_9.473088_g19247_i0 PRJNA870096 20907 396 9.473088 37.51342848 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 183 1.29e-41   NTclustered gi|62199298|gb|AY967668.1| 79327 g19247 i0 85.714 8.07575757575758 175 23 44 2 155 328 642 469 Schmidtea mediterranea clone NBE.7.02A mRNA sequence blastn 3198 183 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
14877362 14877362 PRJNA870096_S_NODE_113312_length_167_cov_1.161290_g111648_i0 PRJNA870096 113312 167 1.16129 1.9393543 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 292 7.58e-75   NTclustered gi|28273263|gb|AY157151.1| 52061 g111648 i0 98.204 1 167 3 100 0 1 167 2213 2379 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 167 292 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;