RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA870096 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8502972 8502972 PRJNA870096_S_NODE_36807_length_293_cov_31.136000_g35143_i0 PRJNA870096 36807 293 31.136 91.22848 Vittaforma corneae 42399 Fungi Fungi 124 5.68e-24   NTclustered gi|667639983|ref|XR_552275.1| 993615 g35143 i0 81.366 17.1194539249147 161 22 54 6 5 162 2206 2361 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 5016 124 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
11053173 11053173 PRJNA870096_S_NODE_1189_length_1657_cov_125.591078_g774_i0 PRJNA870096 1189 1657 125.591078 2081.04416246 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 1600 0   NTclustered gi|2522768008|gb|OR162445.1| 646526 g774 i0 89.206 70.4984912492456 1297 119 78 16 346 1630 1291 4 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 116816 1600 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei
19976563 19976563 PRJNA870096_S_NODE_29936_length_327_cov_32.566901_g28272_i0 PRJNA870096 29936 327 32.566901 106.49376627 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 534 2.4999999999999998e-147   NTclustered gi|2522768008|gb|OR162445.1| 646526 g28272 i0 96.073 26.5871559633028 331 8 100 3 1 327 3662 3991 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8694 534 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei
23801676 23801676 PRJNA870096_S_NODE_117719_length_164_cov_1.190083_g116055_i0 PRJNA870096 117719 164 1.190083 1.95173612 Vairimorpha ceranae 40302 Fungi Fungi 52.8 0.014   NTclustered gi|1372266718|ref|XM_024476377.1| 40302 g116055 i0 100 0.170731707317073 28 0 17 0 89 116 274 301 Nosema ceranae pol polyprotein (AAJ76_76000162), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vairimorpha Vairimorpha ceranae
25075556 25075556 PRJNA870096_S_NODE_1160_length_1673_cov_117.700613_g751_i0 PRJNA870096 1160 1673 117.700613 1969.13125549 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 741 0   NTclustered gi|2522768008|gb|OR162445.1| 646526 g751 i0 85.226 15.7621040047818 731 96 91 12 30 753 1743 2468 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26370 741 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;