RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA870096 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3401050 3401050 PRJNA870096_S_NODE_58043_length_230_cov_2.518717_g56379_i0 PRJNA870096 58043 230 2.518717 5.7930491 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|66814031|ref|XM_636103.1| 352472 g56379 i0 96.875 0.139130434782609 32 1 14 0 123 154 1850 1819 Dictyostelium discoideum AX4 hypothetical protein (hbx9) mRNA, complete cds blastn 32 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
7615351 7615351 PRJNA870096_S_NODE_65586_length_216_cov_2.046243_g63922_i0 PRJNA870096 65586 216 2.046243 4.41988488 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.019   NTclustered gi|330794640|ref|XM_003285338.1| 5786 g63922 i0 100 0.833333333333333 28 0 13 0 147 174 233 206 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_149290), partial mRNA blastn 180 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
13603624 13603624 PRJNA870096_S_NODE_27331_length_344_cov_2.392027_g25667_i0 PRJNA870096 27331 344 2.392027 8.22857288 Dictyostelium purpureum 5786 Evosea other_Eukaryota 241 6.47e-59   NTclustered gi|330845446|ref|XM_003294549.1| 5786 g25667 i0 83.794 11.0232558139535 253 41 74 0 2 254 284 536 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_93248), mRNA blastn 3792 241 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
13604367 13604367 PRJNA870096_S_NODE_88051_length_187_cov_2.000000_g86387_i0 PRJNA870096 88051 187 2 3.74 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|66800340|ref|XM_629094.1| 352472 g86387 i0 92.5 0.213903743315508 40 2 21 1 4 43 2149 2111 Dictyostelium discoideum AX4 Vps52 / Sac2 family protein (vps52B) mRNA, complete cds blastn 40 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;