RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 6 ✖

bioproject 1

  • PRJNA870096 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3401113 3401113 PRJNA870096_S_NODE_63283_length_220_cov_1.949153_g61619_i0 PRJNA870096 63283 220 1.949153 4.2881366 Alphapapillomavirus 7 337042 Viruses Viruses 387 4.7e-103   NTclustered gi|1258167396|gb|MF288663.1| 333761 g61619 i0 99.528 96.3636363636364 212 1 96 0 1 212 2342 2131 Human papillomavirus 18 isolate C415154_R1_1138896_N-P, complete genome blastn 21200 387 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7
4678433 4678433 PRJNA870096_S_NODE_3664_length_972_cov_2.202368_g2762_i0 PRJNA870096 3664 972 2.202368 21.40701696 Alphapapillomavirus 7 337042 Viruses Viruses 1781 0   NTclustered gi|1258167396|gb|MF288663.1| 333761 g2762 i0 100 99.1769547325103 964 0 99 0 1 964 2143 1180 Human papillomavirus 18 isolate C415154_R1_1138896_N-P, complete genome blastn 96400 1781 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7
5065329 5065329 PRJNA870096_S_NODE_139644_length_152_cov_1.165138_g137980_i0 PRJNA870096 139644 152 1.165138 1.77100976 Dependoparvovirus 10803 Viruses Viruses 267 4.08e-67   NTclustered gi|2766605|gb|AF028704.1|AF028704 68558 g137980 i0 100 79.0723684210526 144 0 95 0 9 152 1876 2019 Adeno-associated virus 6, complete genome blastn 12019 267 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Dependoparvovirus Dependoparvovirus primate1
5953672 5953672 PRJNA870096_S_NODE_62945_length_221_cov_1.342697_g61281_i0 PRJNA870096 62945 221 1.342697 2.96736037 Simian Adeno-associated virus 1917081 Viruses Viruses 364 2.2199999999999998e-96   NTclustered gi|1104766984|gb|KT984498.1| 1917081 g61281 i0 97.642 96.579185520362 212 5 96 0 1 212 2666 2455 Simian Adeno-associated virus isolate Cg34 nonstructural protein and capsid protein genes, complete cds blastn 21344 364 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Dependoparvovirus Simian Adeno-associated virus
10165894 10165894 PRJNA870096_S_NODE_55508_length_236_cov_1.134715_g53844_i0 PRJNA870096 55508 236 1.134715 2.6779274 Dependoparvovirus 10803 Viruses Viruses 414 2.34e-111   NTclustered gi|77380105|gb|DQ180604.1| 348794 g53844 i0 99.559 91.8813559322034 227 1 96 0 10 236 1978 2204 Adeno-associated virus VR-195 Rep78 (rep78) and capsid protein (cap) genes, complete cds blastn 21684 414 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Dependoparvovirus Adeno-associated virus VR-195
22526326 22526326 PRJNA870096_S_NODE_126098_length_159_cov_1.017241_g124434_i0 PRJNA870096 126098 159 1.017241 1.61741319 Alphapapillomavirus 7 337042 Viruses Viruses 267 4.3199999999999996e-67   NTclustered gi|1258167963|gb|MF288726.1| 333761 g124434 i0 98.667 94.3396226415094 150 2 94 0 10 159 1097 1246 Human papillomavirus 18 isolate 1314304_N-P, complete genome blastn 15000 267 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;