RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA870096 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11053417 11053417 PRJNA870096_S_NODE_136809_length_153_cov_1.036364_g135145_i0 PRJNA870096 136809 153 1.036364 1.58563692 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 250 4.14e-62   NTclustered gi|2031939004|emb|OD957472.1| 5763 g135145 i0 96.078 8.68627450980392 153 6 100 0 1 153 1068 916 Naegleria fowleri Karachi_NF001 strain blastn 1329 250 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
11053983 11053983 PRJNA870096_S_NODE_58669_length_229_cov_1.806452_g57005_i0 PRJNA870096 58669 229 1.806452 4.13677508 Reclinomonas americana 48483 Root_unresolved Root_unresolved 80.5 9.37e-11   NTclustered gi|11466495|ref|NC_001823.1| 48483 g57005 i0 75.263 4.60698689956332 190 36 80 8 21 204 62264 62080 Reclinomonas americana mitochondrion, complete genome blastn 1055 80.5 1 Eukaryota Discoba       Jakobida Histionidae Reclinomonas Reclinomonas americana
16151903 16151903 PRJNA870096_S_NODE_100833_length_176_cov_1.285714_g99169_i0 PRJNA870096 100833 176 1.285714 2.26285664 Monomorphina pyrum 96784 Euglenozoa other_Eukaryota 158 3.0599999999999993e-34   NTclustered gi|388269856|gb|JQ398665.1| 96784 g99169 i0 86.62 83.9318181818182 142 19 81 0 17 158 889 1030 Monomorphina pyrum heat shock protein 90 (hsp90) mRNA, partial cds blastn 14772 158 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Monomorphina Monomorphina pyrum
19977033 19977033 PRJNA870096_S_NODE_69836_length_209_cov_15.608434_g68172_i0 PRJNA870096 69836 209 15.608434 32.62162706 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.018   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g68172 i0 100 0.133971291866029 28 0 13 0 180 207 35 8 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
19977070 19977070 PRJNA870096_S_NODE_72856_length_205_cov_1.746914_g71192_i0 PRJNA870096 72856 205 1.746914 3.5811737 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.018   NTclustered gi|1031970221|gb|CP015655.1| 85057 g71192 i0 100 0.136585365853659 28 0 14 0 53 80 50537 50510 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;