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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA870096" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA870096 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3401050 3401050 PRJNA870096_S_NODE_58043_length_230_cov_2.518717_g56379_i0 PRJNA870096 58043 230 2.518717 5.7930491 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|66814031|ref|XM_636103.1| 352472 g56379 i0 96.875 0.139130434782609 32 1 14 0 123 154 1850 1819 Dictyostelium discoideum AX4 hypothetical protein (hbx9) mRNA, complete cds blastn 32 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
4678476 4678476 PRJNA870096_S_NODE_41804_length_274_cov_2.095238_g40140_i0 PRJNA870096 41804 274 2.095238 5.74095212 Copromyxa protea 931554 Tubulinea other_Eukaryota 219 2.3399999999999994e-52   NTclustered gi|508737347|dbj|AB766053.1| 931554 g40140 i0 85.577 2.97080291970803 208 30 76 0 67 274 1 208 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 814 219 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
7615351 7615351 PRJNA870096_S_NODE_65586_length_216_cov_2.046243_g63922_i0 PRJNA870096 65586 216 2.046243 4.41988488 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.019   NTclustered gi|330794640|ref|XM_003285338.1| 5786 g63922 i0 100 0.833333333333333 28 0 13 0 147 174 233 206 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_149290), partial mRNA blastn 180 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11053582 11053582 PRJNA870096_S_NODE_19869_length_406_cov_76.776860_g18213_i0 PRJNA870096 19869 406 76.77686 311.7140516 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 691 0   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g18213 i0 99.475 66.8374384236453 381 1 94 1 26 406 588 967 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 27136 691 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
11053799 11053799 PRJNA870096_S_NODE_42149_length_273_cov_1.560870_g40485_i0 PRJNA870096 42149 273 1.56087 4.2611751 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 195 3.94e-45   NTclustered gi|1042160952|dbj|LC102283.1| 1789826 g40485 i0 81.07 85.4249084249084 243 46 89 0 6 248 515 273 Copromyxa sp. MK-2016 mitochondrial COXI gene, cytochrome oxidase subunit I, partial sequence, strain: ZEB1 blastn 23321 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
12329062 12329062 PRJNA870096_S_NODE_2570_length_1150_cov_8.616079_g1863_i0 PRJNA870096 2570 1150 8.616079 99.0849085 Paravannella minima 1443144 Discosea other_Eukaryota 420 2.7899999999999992e-112   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g1863 i0 76.163 70.4947826086957 860 170 73 30 53 887 3676 4525 Paravannella minima mitochondrion, complete genome blastn 81069 420 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
13603624 13603624 PRJNA870096_S_NODE_27331_length_344_cov_2.392027_g25667_i0 PRJNA870096 27331 344 2.392027 8.22857288 Dictyostelium purpureum 5786 Evosea other_Eukaryota 241 6.47e-59   NTclustered gi|330845446|ref|XM_003294549.1| 5786 g25667 i0 83.794 11.0232558139535 253 41 74 0 2 254 284 536 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_93248), mRNA blastn 3792 241 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
13604367 13604367 PRJNA870096_S_NODE_88051_length_187_cov_2.000000_g86387_i0 PRJNA870096 88051 187 2 3.74 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|66800340|ref|XM_629094.1| 352472 g86387 i0 92.5 0.213903743315508 40 2 21 1 4 43 2149 2111 Dictyostelium discoideum AX4 Vps52 / Sac2 family protein (vps52B) mRNA, complete cds blastn 40 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14878652 14878652 PRJNA870096_S_NODE_87832_length_187_cov_32.840278_g86168_i0 PRJNA870096 87832 187 32.840278 61.41131986 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 340 3.0499999999999998e-89   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g86168 i0 99.465 98.9411764705882 187 1 100 0 1 187 1127 941 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 18502 340 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
17428430 17428430 PRJNA870096_S_NODE_5314_length_810_cov_13.572360_g4132_i0 PRJNA870096 5314 810 13.57236 109.936116 Copromyxa protea 931554 Tubulinea other_Eukaryota 431 8.949999999999998e-116   NTclustered gi|508737347|dbj|AB766053.1| 931554 g4132 i0 79.967 1.47407407407407 599 108 73 11 1 593 797 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 1194 431 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18701237 18701237 PRJNA870096_S_NODE_18175_length_426_cov_6.436031_g16523_i0 PRJNA870096 18175 426 6.436031 27.41749206 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 420 9.77e-113   NTclustered gi|33946358|gb|AY294158.1| 239731 g16523 i0 85.969 86.31220657277 392 55 92 0 26 417 712 1103 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 36769 420 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
20363677 20363677 PRJNA870096_S_NODE_4356_length_894_cov_34.159812_g3314_i0 PRJNA870096 4356 894 34.159812 305.38871928 Saccamoeba 136463 Tubulinea other_Eukaryota 1218 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g3314 i0 98.972 59.1733780760626 681 6 76 1 189 869 1808 1129 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 52901 1218 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;