RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA867519 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4676467 4676467 PRJNA867519_P_NODE_16124_length_295_cov_1.040541_g15970_i0 PRJNA867519 16124 295 1.040541 3.06959595 Acidianus hospitalis 563177 Archaea Archaea 52.8 0.027   NTclustered gi|332693428|gb|CP002535.1| 933801 g15970 i0 100 0.0949152542372881 28 0 9 0 247 274 1122679 1122652 Acidianus hospitalis W1, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus hospitalis
8501025 8501025 PRJNA867519_P_NODE_28067_length_248_cov_0.880000_g27913_i0 PRJNA867519 28067 248 0.88 2.1824 Halococcus dombrowskii 179637 Archaea Archaea 381 2.519999999999999e-101   NTclustered gi|2221489803|gb|CP095005.1| 179637 g27913 i0 94.355 10.6693548387097 248 14 100 0 1 248 2199354 2199107 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 2646 381 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
11051725 11051725 PRJNA867519_P_NODE_10829_length_348_cov_0.756364_g10675_i0 PRJNA867519 10829 348 0.756364 2.63214672 Natrinema caseinilyticum 2961570 Archaea Archaea 54.7 0.009   NTclustered gi|2270264148|gb|CP100445.1| 2961570 g10675 i0 88.889 0.129310344827586 45 3 13 1 279 323 1452581 1452539 Natrinema caseinilyticum strain ZJ2 chromosome, complete genome blastn 45 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema caseinilyticum
13601861 13601861 PRJNA867519_P_NODE_33691_length_241_cov_0.916667_g33537_i0 PRJNA867519 33691 241 0.916667 2.20916747 Halorubrum ruber 2982524 Archaea Archaea 58.4 4.66e-4   NTclustered gi|2031421124|gb|CP073695.1| 2982524 g33537 i0 94.737 0.684647302904564 38 1 15 1 123 159 2731878 2731915 Halorubrum ruber strain MBLA0099 chromosome, complete genome blastn 165 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;