RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA867519 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2512521 2512521 PRJNA867519_P_NODE_31202_length_244_cov_0.900585_g31048_i0 PRJNA867519 31202 244 0.900585 2.1974274 Metazoa 33208 Porifera other_Eukaryota 54.7 0.006   NTclustered gi|1808990277|gb|MN103217.1| 6063 g31048 i0 100 0.520491803278688 29 0 12 0 120 148 1971 1999 Halichondria panicea solute carrier family 40 member 1 mRNA, complete cds blastn 127 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
8500974 8500974 PRJNA867519_P_NODE_20667_length_273_cov_1.280000_g20513_i0 PRJNA867519 20667 273 1.28 3.4944 Amphimedon queenslandica 400682 Porifera other_Eukaryota 52.8 0.025   NTclustered gi|1133483315|ref|XM_020004410.1| 400682 g20513 i0 100 0.41025641025641 28 0 10 0 109 136 2045 2072 PREDICTED: Amphimedon queenslandica OTU domain-containing protein 3-like (LOC109580107), transcript variant X2, mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
9776026 9776026 PRJNA867519_P_NODE_14048_length_313_cov_1.025000_g13894_i0 PRJNA867519 14048 313 1.025 3.20825 Sycon ciliatum 27933 Porifera other_Eukaryota 54.7 0.008   NTclustered gi|2732930409|ref|XM_065332261.1| 27933 g13894 i0 100 0.182108626198083 29 0 9 0 72 100 1813 1841 PREDICTED: Sycon ciliatum charged multivesicular body protein 1a-like (LOC135819109), mRNA blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
19974576 19974576 PRJNA867519_P_NODE_10056_length_357_cov_2.552817_g9902_i0 PRJNA867519 10056 357 2.552817 9.11355669 Amphimedon compressa 178514 Porifera other_Eukaryota 124 7.06e-24   NTclustered gi|1284883228|gb|KY825184.1| 178514 g9902 i0 80.347 8.34733893557423 173 27 48 5 187 357 3474 3307 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2980 124 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa
21250184 21250184 PRJNA867519_P_NODE_12697_length_326_cov_1.699605_g12543_i0 PRJNA867519 12697 326 1.699605 5.5407123 Halisarca dujardinii 2583056 Porifera other_Eukaryota 204 7.99e-48   NTclustered gi|2413770082|gb|ON088636.1| 2583056 g12543 i0 83.482 9.17484662576687 224 31 68 5 102 322 1106 886 Halisarca dujardinii Arp2 mRNA, complete cds blastn 2991 204 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Chondrillida Halisarcidae Halisarca Halisarca dujardinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;