contig_metadata
24 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 848094 | 848094 | PRJNA867519_P_NODE_23861_length_258_cov_1.664865_g23707_i0 | PRJNA867519 | 23861 | 258 | 1.664865 | 4.2953517 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 224 | 4.7e-54 | NTclustered | gi|813183247|ref|XM_012350822.1| | 695850 | g23707 | i0 | 85.514 | 44.7558139534884 | 214 | 31 | 83 | 0 | 45 | 258 | 71 | 284 | Saprolegnia parasitica CBS 223.65 Ras-like GTP-binding protein YPT1 mRNA | blastn | 11547 | 224 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 3398791 | 3398791 | PRJNA867519_P_NODE_15843_length_297_cov_1.339286_g15689_i0 | PRJNA867519 | 15843 | 297 | 1.339286 | 3.97767942 | Saprolegnia diclina | 112098 | SAR_Eukaryotes | SAR_Eukaryotes | 204 | 7.199999999999999e-48 | NTclustered | gi|669150451|ref|XM_008612566.1| | 1156394 | g15689 | i0 | 80.216 | 5.21885521885522 | 278 | 49 | 93 | 6 | 23 | 297 | 495 | 221 | Saprolegnia diclina VS20 40S ribosomal protein S11 mRNA | blastn | 1550 | 204 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia diclina | ||
| 3398897 | 3398897 | PRJNA867519_P_NODE_28463_length_247_cov_1.770115_g28309_i0 | PRJNA867519 | 28463 | 247 | 1.770115 | 4.37218405 | Phytophthora capsici | 4784 | SAR_Eukaryotes | SAR_Eukaryotes | 183 | 7.59e-42 | NTclustered | gi|189084813|gb|BT032344.1| | 4784 | g28309 | i0 | 80.851 | 38.5465587044534 | 235 | 43 | 95 | 2 | 2 | 235 | 1221 | 1454 | Phytophthora capsici clone CBOT181-F14 mRNA sequence | blastn | 9521 | 183 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora capsici | ||
| 5951336 | 5951336 | PRJNA867519_P_NODE_14465_length_309_cov_1.347458_g14311_i0 | PRJNA867519 | 14465 | 309 | 1.347458 | 4.16364522 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 128 | 4.66e-25 | NTclustered | gi|673039884|ref|XM_008875681.1| | 157072 | g14311 | i0 | 84.328 | 1.2621359223301 | 134 | 17 | 43 | 3 | 166 | 298 | 459 | 329 | Aphanomyces invadans 60S ribosomal protein mRNA | blastn | 390 | 128 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 8501074 | 8501074 | PRJNA867519_P_NODE_3587_length_552_cov_2.200418_g3436_i0 | PRJNA867519 | 3587 | 552 | 2.200418 | 12.14630736 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 291 | 1.0599999999999998e-73 | NTclustered | gi|2795045397|ref|XM_067939565.1| | 4785 | g3436 | i0 | 86.194 | 44.4347826086956 | 268 | 37 | 49 | 0 | 267 | 534 | 268 | 1 | Phytophthora cinnamomi dynein light chain LC6, flagellar outer arm (IUM83_14793), partial mRNA | blastn | 24528 | 291 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 9776024 | 9776024 | PRJNA867519_P_NODE_13068_length_322_cov_1.855422_g12914_i0 | PRJNA867519 | 13068 | 322 | 1.855422 | 5.97445884 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 257 | 5.97e-64 | NTclustered | gi|813199585|ref|XM_012353974.1| | 695850 | g12914 | i0 | 82.085 | 63.4596273291925 | 307 | 49 | 94 | 6 | 16 | 319 | 331 | 28 | Saprolegnia parasitica CBS 223.65 40S ribosomal protein S15a mRNA | blastn | 20434 | 257 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 10165514 | 10165514 | PRJNA867519_P_NODE_18268_length_283_cov_1.657143_g18114_i0 | PRJNA867519 | 18268 | 283 | 1.657143 | 4.68971469 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 169 | 2.4899999999999996e-37 | NTclustered | gi|813138592|ref|XM_012343408.1| | 695850 | g18114 | i0 | 83.158 | 26.6678445229682 | 190 | 26 | 66 | 4 | 59 | 245 | 1031 | 1217 | Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA | blastn | 7547 | 169 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 11051759 | 11051759 | PRJNA867519_P_NODE_14949_length_305_cov_0.995690_g14795_i0 | PRJNA867519 | 14949 | 305 | 0.99569 | 3.0368545 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 165 | 3.5e-36 | NTclustered | gi|673017857|ref|XM_008864668.1| | 157072 | g14795 | i0 | 84 | 1.33770491803279 | 175 | 24 | 57 | 4 | 41 | 213 | 359 | 531 | Aphanomyces invadans 60S ribosomal protein mRNA | blastn | 408 | 165 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 11440734 | 11440734 | PRJNA867519_P_NODE_20069_length_275_cov_1.717822_g19915_i0 | PRJNA867519 | 20069 | 275 | 1.717822 | 4.7240105 | Saprolegnia | 4769 | SAR_Eukaryotes | SAR_Eukaryotes | 224 | 5.059999999999999e-54 | NTclustered | gi|813184675|ref|XM_012351120.1| | 695850 | g19915 | i0 | 81.55 | 17.3454545454545 | 271 | 50 | 99 | 0 | 3 | 273 | 7184 | 7454 | Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA | blastn | 4770 | 224 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 12327200 | 12327200 | PRJNA867519_P_NODE_1790_length_732_cov_2.071320_g1643_i0 | PRJNA867519 | 1790 | 732 | 2.07132 | 15.1620624 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 224 | 1.47e-53 | NTclustered | gi|2795061008|ref|XM_067940276.1| | 4785 | g1643 | i0 | 82.869 | 14.3032786885246 | 251 | 41 | 34 | 2 | 386 | 635 | 181 | 430 | Phytophthora cinnamomi 60S ribosomal protein L23a (IUM83_15460), partial mRNA | blastn | 10470 | 224 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 12716540 | 12716540 | PRJNA867519_P_NODE_14690_length_307_cov_1.316239_g14536_i0 | PRJNA867519 | 14690 | 307 | 1.316239 | 4.04085373 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 320 | 7.11e-83 | NTclustered | gi|2795048880|ref|XM_067943659.1| | 4785 | g14536 | i0 | 86.552 | 99.2312703583062 | 290 | 39 | 94 | 0 | 1 | 290 | 296 | 7 | Phytophthora cinnamomi Calmodulin (IUM83_18649), partial mRNA | blastn | 30464 | 320 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 13601846 | 13601846 | PRJNA867519_P_NODE_32111_length_243_cov_0.905882_g31957_i0 | PRJNA867519 | 32111 | 243 | 0.905882 | 2.20129326 | Aphanomyces euteiches | 100861 | SAR_Eukaryotes | SAR_Eukaryotes | 449 | 6.65e-122 | NTclustered | gi|166044491|emb|CU367400.1| | 100861 | g31957 | i0 | 100 | 3.46502057613169 | 243 | 0 | 100 | 0 | 1 | 243 | 238 | 480 | Aphanomyces euteiches cDNA | blastn | 842 | 449 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces euteiches | ||
| 15264908 | 15264908 | PRJNA867519_P_NODE_26732_length_250_cov_0.870056_g26578_i0 | PRJNA867519 | 26732 | 250 | 0.870056 | 2.17514 | root | 1 | Root_unresolved | Root_unresolved | 174 | 4.63e-39 | NTclustered | gi|669154877|ref|XM_008614779.1| | 1156394 | g26578 | i0 | 81.818 | 84.484 | 209 | 36 | 83 | 2 | 1 | 207 | 257 | 49 | Saprolegnia diclina VS20 isocitrate dehydrogenase [NADP] mRNA | blastn | 21121 | 174 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia diclina | ||
| 16150766 | 16150766 | PRJNA867519_P_NODE_26073_length_250_cov_1.740113_g25919_i0 | PRJNA867519 | 26073 | 250 | 1.740113 | 4.3502825 | Saprolegnia diclina | 112098 | SAR_Eukaryotes | SAR_Eukaryotes | 154 | 6.03e-33 | NTclustered | gi|669139319|ref|XM_008607006.1| | 1156394 | g25919 | i0 | 78.099 | 2.228 | 242 | 53 | 97 | 0 | 1 | 242 | 544 | 303 | Saprolegnia diclina VS20 ribosomal RNA assembly protein mRNA | blastn | 557 | 154 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia diclina | ||
| 16150868 | 16150868 | PRJNA867519_P_NODE_5773_length_451_cov_2.031746_g5619_i0 | PRJNA867519 | 5773 | 451 | 2.031746 | 9.16317446 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 300 | 1.41e-76 | NTclustered | gi|695425628|ref|XM_009530930.1| | 67593 | g5619 | i0 | 79.859 | 38.7139689578714 | 427 | 73 | 94 | 9 | 30 | 451 | 322 | 740 | Phytophthora sojae hypothetical protein mRNA | blastn | 17460 | 300 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 17426266 | 17426266 | PRJNA867519_P_NODE_1814_length_728_cov_17.335878_g1667_i0 | PRJNA867519 | 1814 | 728 | 17.335878 | 126.20519184 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 436 | 1.72e-117 | NTclustered | gi|695406639|ref|XM_009525867.1| | 67593 | g1667 | i0 | 79.806 | 35.1304945054945 | 619 | 110 | 85 | 11 | 23 | 638 | 10 | 616 | Phytophthora sojae hypothetical protein mRNA | blastn | 25575 | 436 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 17814453 | 17814453 | PRJNA867519_P_NODE_4714_length_491_cov_14.232057_g4561_i0 | PRJNA867519 | 4714 | 491 | 14.232057 | 69.87939987 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 399 | 1.4899999999999995e-106 | NTclustered | gi|695405971|ref|XM_009525682.1| | 67593 | g4561 | i0 | 84.925 | 72.6720977596741 | 398 | 56 | 81 | 4 | 42 | 437 | 51 | 446 | Phytophthora sojae hypothetical protein mRNA | blastn | 35682 | 403 | 0.990074441687345 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 20363378 | 20363378 | PRJNA867519_P_NODE_7876_length_394_cov_1.763240_g7722_i0 | PRJNA867519 | 7876 | 394 | 1.76324 | 6.9471656 | Saprolegnia | 4769 | SAR_Eukaryotes | SAR_Eukaryotes | 206 | 2.7299999999999994e-48 | NTclustered | gi|813186088|ref|XM_012351826.1| | 695850 | g7722 | i0 | 77.322 | 10.9263959390863 | 366 | 72 | 91 | 9 | 4 | 362 | 594 | 233 | Saprolegnia parasitica CBS 223.65 40S ribosomal protein S8 mRNA | blastn | 4305 | 207 | 0.995169082125604 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 21250244 | 21250244 | PRJNA867519_P_NODE_18977_length_280_cov_1.487923_g18823_i0 | PRJNA867519 | 18977 | 280 | 1.487923 | 4.1661844 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 172 | 1.8999999999999995e-38 | NTclustered | gi|2795052452|ref|XM_067926699.1| | 4785 | g18823 | i0 | 93.162 | 39.7392857142857 | 117 | 8 | 42 | 0 | 1 | 117 | 403 | 519 | Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA | blastn | 11127 | 172 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 21250382 | 21250382 | PRJNA867519_P_NODE_8037_length_391_cov_1.694969_g7883_i0 | PRJNA867519 | 8037 | 391 | 1.694969 | 6.62732879 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 239 | 2.67e-58 | NTclustered | gi|813150484|ref|XM_012345499.1| | 695850 | g7883 | i0 | 83.459 | 14.0281329923274 | 266 | 34 | 67 | 10 | 12 | 272 | 492 | 752 | Saprolegnia parasitica CBS 223.65 40S ribosomal protein S3a-2 mRNA | blastn | 5485 | 239 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 22524930 | 22524930 | PRJNA867519_P_NODE_7018_length_414_cov_3.085044_g6864_i0 | PRJNA867519 | 7018 | 414 | 3.085044 | 12.77208216 | Saprolegnia diclina | 112098 | SAR_Eukaryotes | SAR_Eukaryotes | 265 | 4.7e-66 | NTclustered | gi|669149499|ref|XM_008612090.1| | 1156394 | g6864 | i0 | 81.065 | 20.2512077294686 | 338 | 58 | 81 | 5 | 23 | 357 | 270 | 604 | Saprolegnia diclina VS20 40S ribosomal protein mRNA | blastn | 8384 | 265 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia diclina | ||
| 22524931 | 22524931 | PRJNA867519_P_NODE_7078_length_413_cov_1.926471_g6924_i0 | PRJNA867519 | 7078 | 413 | 1.926471 | 7.95632523 | Phytophthora ramorum | 164328 | SAR_Eukaryotes | SAR_Eukaryotes | 248 | 4.72e-61 | NTclustered | gi|2794923360|ref|XM_067881981.1| | 164328 | g6924 | i0 | 91.209 | 43.5956416464891 | 182 | 16 | 44 | 0 | 232 | 413 | 450 | 269 | Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA | blastn | 18005 | 248 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora ramorum | ||
| 23800313 | 23800313 | PRJNA867519_P_NODE_22639_length_264_cov_1.209424_g22485_i0 | PRJNA867519 | 22639 | 264 | 1.209424 | 3.19287936 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 148 | 2.9899999999999995e-31 | NTclustered | gi|695386086|ref|XM_009520166.1| | 67593 | g22485 | i0 | 79.186 | 6.65530303030303 | 221 | 40 | 83 | 5 | 47 | 264 | 955 | 738 | Phytophthora sojae hypothetical protein mRNA | blastn | 1757 | 148 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 23800417 | 23800417 | PRJNA867519_P_NODE_4979_length_481_cov_3.487745_g4825_i0 | PRJNA867519 | 4979 | 481 | 3.487745 | 16.77605345 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 302 | 4.21e-77 | NTclustered | gi|2795040529|ref|XM_067944818.1| | 4785 | g4825 | i0 | 80.89 | 39.970893970894 | 382 | 73 | 79 | 0 | 74 | 455 | 405 | 24 | Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA | blastn | 19226 | 302 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;