RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA867519 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4676457 4676457 PRJNA867519_P_NODE_15184_length_303_cov_1.004348_g15030_i0 PRJNA867519 15184 303 1.004348 3.04317444 Archangium gephyra 48 Bacteria Bacteria 56.5 0.002   NTclustered gi|2809295724|gb|CP102578.1| 48 g15030 i0 89.13 0.151815181518152 46 4 15 1 66 111 6450849 6450893 Archangium gephyra strain SDU49 chromosome, complete genome blastn 46 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
4676520 4676520 PRJNA867519_P_NODE_23544_length_260_cov_1.304813_g23390_i0 PRJNA867519 23544 260 1.304813 3.3925138 Nannocystis punicea 2995304 Bacteria Bacteria 52.8 0.024   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g23390 i0 96.774 0.119230769230769 31 1 12 0 64 94 6624980 6624950 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 31 52.8 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
9776147 9776147 PRJNA867519_P_NODE_33688_length_241_cov_0.916667_g33534_i0 PRJNA867519 33688 241 0.916667 2.20916747 Nannocystis sp. 1962667 Bacteria Bacteria 263 9.21e-66   NTclustered gi|1386873111|gb|MF774778.1| 1962667 g33534 i0 87.611 140.883817427386 226 28 94 0 16 241 435 660 Nannocystis sp. strain MNa11734 23S ribosomal RNA gene, partial sequence blastn 33953 263 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
14876035 14876035 PRJNA867519_P_NODE_14972_length_304_cov_3.398268_g14818_i0 PRJNA867519 14972 304 3.398268 10.33073472 Labilithrix luteola 1391654 Bacteria Bacteria 54.7 0.008   NTclustered gi|913610804|gb|CP012333.1| 1391654 g14818 i0 100 0.0953947368421053 29 0 10 0 160 188 9099169 9099141 Labilithrix luteola strain DSM 27648, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;