RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA867519 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18699442 18699442 PRJNA867519_P_NODE_22395_length_265_cov_1.359375_g22241_i0 PRJNA867519 22395 265 1.359375 3.60234375 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 235 2.24e-57   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g22241 i0 90.503 45.3924528301887 179 16 68 1 4 182 3696 3873 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 12029 235 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
22524880 22524880 PRJNA867519_P_NODE_32518_length_242_cov_1.473373_g32364_i0 PRJNA867519 32518 242 1.473373 3.56556266 Clathrulina elegans 238774 SAR_Eukaryotes SAR_Eukaryotes 154 5.81e-33   NTclustered gi|33089911|gb|AY283754.1| 238774 g32364 i0 87.879 17.6363636363636 132 14 54 2 65 195 784 654 Clathrulina elegans isolate Cla70_1 actin mRNA, partial cds blastn 4268 154 1 Eukaryota Sar   Cercozoa     Clathrulinidae Clathrulina Clathrulina elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;