RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA867519 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5951356 5951356 PRJNA867519_P_NODE_17305_length_287_cov_3.836449_g17151_i0 PRJNA867519 17305 287 3.836449 11.01060863 Skokie tombus-like virus 2789423 Viruses Viruses 497 2.84e-136   NTclustered gi|1933757594|gb|MW177751.1| 2789423 g17151 i0 97.909 1 287 6 100 0 1 287 16 302 Skokie tombus-like virus strain USAdp coat protein gene, partial cds blastn 287 497 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
7226371 7226371 PRJNA867519_P_NODE_2926_length_600_cov_1.413662_g2775_i0 PRJNA867519 2926 600 1.413662 8.481972 Carpotroche-associated picornavirus 2975512 Viruses Viruses 948 0   NTclustered gi|2292905076|gb|OL964097.1| 2975512 g2775 i0 95.167 3 600 29 100 0 1 600 5181 4582 Carpotroche-associated picornavirus polyprotein gene, complete cds blastn 1800 948 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Carpotroche-associated picornavirus
18699425 18699425 PRJNA867519_P_NODE_2095_length_689_cov_1.383117_g1947_i0 PRJNA867519 2095 689 1.383117 9.52967613 Skokie tombus-like virus 2789423 Viruses Viruses 322 4.75e-83   NTclustered gi|1933757594|gb|MW177751.1| 2789423 g1947 i0 95.522 0.291727140783745 201 9 29 0 1 201 1069 1269 Skokie tombus-like virus strain USAdp coat protein gene, partial cds blastn 201 322 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
22524724 22524724 PRJNA867519_P_NODE_11018_length_346_cov_0.846154_g10864_i0 PRJNA867519 11018 346 0.846154 2.92769284 Carpotroche-associated picornavirus 2975512 Viruses Viruses 568 2.6299999999999995e-157   NTclustered gi|2292905076|gb|OL964097.1| 2975512 g10864 i0 96.243 2.99132947976879 346 13 100 0 1 346 3770 4115 Carpotroche-associated picornavirus polyprotein gene, complete cds blastn 1035 568 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Carpotroche-associated picornavirus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;