RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA867519 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5951354 5951354 PRJNA867519_P_NODE_17085_length_288_cov_2.562791_g16931_i0 PRJNA867519 17085 288 2.562791 7.38083808 Nibricoccus aquaticus 2576891 Bacteria Bacteria 56.5 0.002   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g16931 i0 96.97 0.114583333333333 33 1 11 0 155 187 3609963 3609995 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 33 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
16150704 16150704 PRJNA867519_P_NODE_16773_length_290_cov_1.336406_g16619_i0 PRJNA867519 16773 290 1.336406 3.8755774 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 222 1.9299999999999999e-53   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g16619 i0 83.004 83.9379310344828 253 36 87 7 3 253 422697 422944 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 24342 222 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
21250290 21250290 PRJNA867519_P_NODE_26637_length_250_cov_0.870056_g26483_i0 PRJNA867519 26637 250 0.870056 2.17514 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 62.1 3.76e-5   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g26483 i0 97.222 2.188 36 1 14 0 207 242 5343715 5343750 Luteolibacter sp. Populi chromosome, complete genome blastn 547 62.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;