RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA867519 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14876204 14876204 PRJNA867519_P_NODE_6032_length_442_cov_2.289973_g5878_i0 PRJNA867519 6032 442 2.289973 10.121680660000001 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 289 2.99e-73   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g5878 i0 83.934 12.8190045248869 305 45 69 4 92 394 402 100 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 5666 289 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
17814448 17814448 PRJNA867519_P_NODE_3394_length_564_cov_1.959267_g3243_i0 PRJNA867519 3394 564 1.959267 11.05026588 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 187 1.46e-42   NTclustered gi|61187370|gb|AY752991.1| 299901 g3243 i0 94.309 22.5195035460993 123 6 22 1 319 441 1977 2098 Sphaerastrum fockii 28S ribosomal RNA gene, partial sequence blastn 12701 187 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Sphaerastrum Sphaerastrum fockii
22914678 22914678 PRJNA867519_P_NODE_3658_length_547_cov_1.683544_g3507_i0 PRJNA867519 3658 547 1.683544 9.20898568 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 398 5.999999999999997e-106   NTclustered gi|551539306|ref|XM_005758086.1| 280463 g3507 i0 81.113 76.8263254113346 503 90 92 5 46 547 919 421 Emiliania huxleyi CCMP1516 receptor of activated protein kinase C partial mRNA blastn 42024 401 0.992518703241895 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;