RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA867519" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 7 ✖

bioproject 1

  • PRJNA867519 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4676468 4676468 PRJNA867519_P_NODE_16144_length_294_cov_2.782805_g15990_i0 PRJNA867519 16144 294 2.782805 8.1814467 Thecamonas trahens 529818 Root_unresolved Root_unresolved 143 1.57e-29   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g15990 i0 81.818 0.833333333333333 176 26 59 6 62 234 322 150 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 245 143 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
4676639 4676639 PRJNA867519_P_NODE_6684_length_423_cov_6.940000_g6530_i0 PRJNA867519 6684 423 6.94 29.3562 Karpovia croatica 2925417 Root_unresolved Root_unresolved 99 5.16e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g6530 i0 88.095 13.6146572104019 84 9 20 1 1 84 6102 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5759 99 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
13601844 13601844 PRJNA867519_P_NODE_31871_length_243_cov_0.905882_g31717_i0 PRJNA867519 31871 243 0.905882 2.20129326 Thecamonas trahens 529818 Root_unresolved Root_unresolved 294 3.3e-75   NTclustered gi|923129792|ref|XM_013902908.1| 461836 g31717 i0 89.076 96.9012345679012 238 24 98 2 2 238 266 30 Thecamonas trahens ATCC 50062 Ras-like C3 botulinum toxin substrate 1 (AMSG_04690), mRNA blastn 23547 294 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14876159 14876159 PRJNA867519_P_NODE_3192_length_580_cov_1.059172_g3041_i0 PRJNA867519 3192 580 1.059172 6.1431976 Thecamonas trahens 529818 Root_unresolved Root_unresolved 261 8.74e-65   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g3041 i0 88.584 30.448275862069 219 19 37 5 1 216 561 776 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 17660 261 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14876192 14876192 PRJNA867519_P_NODE_4612_length_495_cov_5.995261_g4459_i0 PRJNA867519 4612 495 5.995261 29.67654195 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 152 4.6299999999999997e-32   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g4459 i0 88.71 25.1393939393939 124 14 25 0 112 235 5301 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12444 152 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
19974582 19974582 PRJNA867519_P_NODE_10336_length_353_cov_22.371429_g10182_i0 PRJNA867519 10336 353 22.371429 78.97114437 Thecamonas trahens 529818 Root_unresolved Root_unresolved 154 8.890000000000001e-33   NTclustered gi|923125900|ref|XM_013900964.1| 461836 g10182 i0 89.344 9.71671388101983 122 13 35 0 184 305 156 35 Thecamonas trahens ATCC 50062 60S ribosomal protein L39 (AMSG_06579), partial mRNA blastn 3430 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21250343 21250343 PRJNA867519_P_NODE_4057_length_524_cov_2.545455_g3905_i0 PRJNA867519 4057 524 2.545455 13.3381842 Thecamonas trahens 529818 Root_unresolved Root_unresolved 318 4.5899999999999983e-82   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g3905 i0 90.756 43.1965648854962 238 22 45 0 1 238 505 742 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 22635 318 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;