RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA864829" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA864829 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11440641 11440641 PRJNA864829_S_NODE_489_length_625_cov_10.722222_g414_i0 PRJNA864829 489 625 10.722222 67.0138875 Mucoromycota 1913637 Fungi Fungi 154 1.6499999999999999e-32   NTclustered gi|344165581|gb|JF439137.1| 144539 g414 i0 92.523 17.024 107 8 17 0 3 109 805 699 Paraglomus occultum isolate Po-2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10640 154 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Paraglomerales Paraglomeraceae Paraglomus Paraglomus occultum
16149974 16149974 PRJNA864829_S_NODE_4333_length_278_cov_7.436681_g4247_i0 PRJNA864829 4333 278 7.436681 20.67397318 uncultured Acaulospora 254030 Fungi Fungi 294 3.85e-75   NTclustered gi|583967819|gb|KF849526.1| 254030 g4247 i0 87.072 94.4136690647482 263 30 94 4 18 278 790 1050 Uncultured Acaulospora clone AM46 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26247 294 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Acaulosporaceae   uncultured Acaulospora
19088385 19088385 PRJNA864829_S_NODE_4575_length_273_cov_3.808036_g4489_i0 PRJNA864829 4575 273 3.808036 10.39593828 Fungi 4751 Fungi Fungi 459 1.2599999999999999e-124   NTclustered gi|658131632|emb|HF968958.1| 4874 g4489 i0 100 130.809523809524 248 0 91 0 1 248 2242 1995 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 35711 459 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;