RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA864829" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA864829 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19088383 19088383 PRJNA864829_S_NODE_3315_length_305_cov_7.515625_g3229_i0 PRJNA864829 3315 305 7.515625 22.92265625 Gastropoda 6448 Mollusca Mollusca 115 3.58e-21   NTclustered gi|340763917|gb|JF509736.1| 176853 g3229 i0 82.09 19.2360655737705 134 24 44 0 8 141 2478 2345 Crepidula fornicata voucher AToL000306 28S ribosomal RNA gene, partial sequence blastn 5867 115 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Calyptraeidae Crepidula Crepidula fornicata
21249453 21249453 PRJNA864829_S_NODE_5777_length_250_cov_1.890547_g5691_i0 PRJNA864829 5777 250 1.890547 4.7263675 Anadara broughtonii 148819 Mollusca Mollusca 56.5 0.002   NTclustered gi|2170965484|dbj|LC593126.1| 148819 g5691 i0 100 0.5 30 0 12 0 221 250 58 29 Anadara broughtonii GnRH mRNA for gonadotropin releasing hormone, complete cds blastn 125 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Anadara Anadara broughtonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;