RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA864829" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA864829 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2122636 2122636 PRJNA864829_S_NODE_12962_length_178_cov_1.651163_g12876_i0 PRJNA864829 12962 178 1.651163 2.93907014 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 137 4.04e-28   NTclustered gi|2874253938|emb|OY970263.1| 412054 g12876 i0 80.663 3.48876404494382 181 31 100 4 1 178 802658 802837 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 621 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5064939 5064939 PRJNA864829_S_NODE_364_length_700_cov_14.041475_g301_i0 PRJNA864829 364 700 14.041475 98.290325 Gemmatimonas 173479 Bacteria Bacteria 739 0   NTclustered gi|470475286|ref|NR_076270.1| 173480 g301 i0 87.443 30.9614285714286 653 68 92 11 28 672 2 648 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 21673 739 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
5950586 5950586 PRJNA864829_S_NODE_45_length_1383_cov_9.213643_g32_i0 PRJNA864829 45 1383 9.213643 127.42468269 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 1522 0   NTclustered gi|2874253995|emb|OY970320.1| 246130 g32 i0 87.057 184.922631959508 1383 136 98 38 1 1358 233244 231880 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 255748 1522 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;