RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA864829" and tax_phylum = "Cyanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA864829 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1236867 1236867 PRJNA864829_S_NODE_14861_length_168_cov_2.655462_g14775_i0 PRJNA864829 14861 168 2.655462 4.46117616 Bacteria 2 Bacteria Bacteria 278 2.14e-70   NTclustered gi|429732865|gb|JX887884.1| 1211 g14775 i0 96.429 101.47619047619 168 6 100 0 1 168 212 45 Uncultured cyanobacterium clone Emix2.2 16S ribosomal RNA gene, 16S-23S ribosomal RNA intergenic spacer, and tRNA-Ile gene, partial sequence blastn 17048 278 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
1236881 1236881 PRJNA864829_S_NODE_8121_length_217_cov_3.107143_g8035_i0 PRJNA864829 8121 217 3.107143 6.74250031 Bacteria 2 Bacteria Bacteria 385 1.66e-102   NTclustered gi|336109608|gb|JN020217.1| 1211 g8035 i0 98.618 101.981566820276 217 3 100 0 1 217 486 702 Uncultured cyanobacterium clone cher4_2B_90 small subunit ribosomal RNA gene, partial sequence blastn 22130 385 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
17814318 17814318 PRJNA864829_S_NODE_11514_length_188_cov_0.978417_g11428_i0 PRJNA864829 11514 188 0.978417 1.83942396 Cyanophyceae 3028117 Bacteria Bacteria 56.5 0.001   NTclustered gi|169884305|gb|CP000951.1| 32049 g11428 i0 100 3.98936170212766 30 0 16 0 26 55 1464721 1464750 Synechococcus sp. PCC 7002, complete genome blastn 750 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus Picosynechococcus sp. PCC 7002
21638902 21638902 PRJNA864829_S_NODE_13617_length_174_cov_1.528000_g13531_i0 PRJNA864829 13617 174 1.528 2.65872 Bacteria 2 Bacteria Bacteria 257 2.89e-64   NTclustered gi|429732865|gb|JX887884.1| 1211 g13531 i0 97.351 87.2298850574713 151 4 87 0 24 174 582 732 Uncultured cyanobacterium clone Emix2.2 16S ribosomal RNA gene, 16S-23S ribosomal RNA intergenic spacer, and tRNA-Ile gene, partial sequence blastn 15178 257 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;