RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA861969" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA861969 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3788418 3788418 PRJNA861969_P_NODE_9063_length_429_cov_1.081461_g8832_i0 PRJNA861969 9063 429 1.081461 4.63946769 Archangiaceae 39 Bacteria Bacteria 680 0   NTclustered gi|2579665545|gb|CP043492.1| 43 g8832 i0 98.446 211.452214452214 386 6 99 0 44 429 452593 452978 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 90713 680 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
7224815 7224815 PRJNA861969_P_NODE_4186_length_640_cov_1.606702_g3959_i0 PRJNA861969 4186 640 1.606702 10.2828928 Cystobacter fuscus 43 Bacteria Bacteria 1149 0   NTclustered gi|2579665545|gb|CP043492.1| 43 g3959 i0 99.062 243.2 640 6 100 0 1 640 7643749 7643110 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 155648 1149 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
12325811 12325811 PRJNA861969_P_NODE_4950_length_582_cov_2.298625_g4720_i0 PRJNA861969 4950 582 2.298625 13.3779975 Cystobacter fuscus 43 Bacteria Bacteria 1070 0   NTclustered gi|2579665545|gb|CP043492.1| 43 g4720 i0 99.828 277.79381443299 582 1 100 0 1 582 452320 451739 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 161676 1070 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;