RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA861969" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA861969 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
846450 846450 PRJNA861969_P_NODE_33781_length_248_cov_0.880000_g33550_i0 PRJNA861969 33781 248 0.88 2.1824 Gemmata massiliana 1210884 Bacteria Bacteria 265 2.6499999999999997e-66   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g33550 i0 85.944 1.00403225806452 249 33 100 2 1 248 4104838 4104591 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 249 265 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
8499078 8499078 PRJNA861969_P_NODE_16287_length_331_cov_0.895349_g16056_i0 PRJNA861969 16287 331 0.895349 2.96360519 Chthoniobacter flavus 191863 Bacteria Bacteria 494 4.31e-135   NTclustered gi|183579828|emb|AM905425.1| 497964 g16056 i0 93.656 256.253776435045 331 19 100 2 1 331 2227 1899 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 84820 494 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
23798674 23798674 PRJNA861969_P_NODE_33059_length_249_cov_0.875000_g32828_i0 PRJNA861969 33059 249 0.875 2.17875 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874254106|emb|OY970189.1| 100233 g32828 i0 94.286 0.140562248995984 35 2 14 0 184 218 7103919 7103885 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 35 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;