RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA859990" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA859990 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4674395 4674395 PRJNA859990_S_NODE_2924_length_546_cov_1.501057_g2666_i0 PRJNA859990 2924 546 1.501057 8.19577122 Sandaracinus amylolyticus 927083 Bacteria Bacteria 776 0   NTclustered gi|816953346|gb|CP011125.1| 927083 g2666 i0 93.032 129.68315018315 531 37 97 0 1 531 8616407 8615877 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 70807 776 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
23798004 23798004 PRJNA859990_S_NODE_11419_length_303_cov_1.682609_g11158_i0 PRJNA859990 11419 303 1.682609 5.09830527 Sandaracinus amylolyticus 927083 Bacteria Bacteria 414 3.12e-111   NTclustered gi|2183633570|gb|CP070225.1| 927083 g11158 i0 91.475 131.613861386139 305 20 100 4 1 303 9677675 9677375 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 39879 414 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
25072146 25072146 PRJNA859990_S_NODE_7960_length_354_cov_2.587189_g7699_i0 PRJNA859990 7960 354 2.587189 9.15864906 Sandaracinus amylolyticus 927083 Bacteria Bacteria 510 4.6e-140   NTclustered gi|816953346|gb|CP011125.1| 927083 g7699 i0 92.655 181.194915254237 354 26 100 0 1 354 8615593 8615240 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 64143 510 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;