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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA859990" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA859990 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
845860 845860 PRJNA859990_S_NODE_19661_length_246_cov_1.606936_g19400_i0 PRJNA859990 19661 246 1.606936 3.95306256 Sus scrofa 9823 Chordata Chordata 455 1.4500000000000002e-123   NTclustered gi|71470684|emb|CR956416.5| 9823 g19400 i0 100 1 246 0 100 0 1 246 127913 128158 Pig DNA sequence from clone PigI-464E6 on chromosome 7, complete sequence blastn 246 455 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
2121340 2121340 PRJNA859990_S_NODE_21642_length_242_cov_0.940828_g21381_i0 PRJNA859990 21642 242 0.940828 2.27680376 Canis lupus 9612 Chordata Chordata 302 1.96e-77   NTclustered gi|116175039|gb|AC189730.3| 9615 g21381 i0 89.212 21.4380165289256 241 26 99 0 1 241 9783 9543 Canis Familiaris, clone XX-494D7, complete sequence blastn 5188 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
2121374 2121374 PRJNA859990_S_NODE_3642_length_498_cov_1.691765_g3383_i0 PRJNA859990 3642 498 1.691765 8.4249897 Hyla sarda 327740 Chordata Chordata 82.4 6.2e-11   NTclustered gi|2512136612|ref|XM_056541739.1| 327740 g3383 i0 87.671 10.5381526104418 73 5 14 3 120 188 9 81 PREDICTED: Hyla sarda olfactory receptor 6N1-like (LOC130293237), mRNA blastn 5248 82.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
3396633 3396633 PRJNA859990_S_NODE_21083_length_243_cov_1.235294_g20822_i0 PRJNA859990 21083 243 1.235294 3.00176442 Sus scrofa 9823 Chordata Chordata 449 6.65e-122   NTclustered gi|290965051|emb|CU207360.8| 9823 g20822 i0 100 1 243 0 100 0 1 243 160324 160082 Pig DNA sequence from clone CH242-502K21 on chromosome X, complete sequence blastn 243 449 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
4674360 4674360 PRJNA859990_S_NODE_20884_length_244_cov_0.865497_g20623_i0 PRJNA859990 20884 244 0.865497 2.11181268 Moschus berezovskii 68408 Chordata Chordata 67.6 7.86e-7   NTclustered gi|2492381330|ref|XM_055405785.1| 68408 g20623 i0 93.333 4.37704918032787 45 3 18 0 73 117 17980 18024 PREDICTED: Moschus berezovskii nitric oxide synthase 1 (NOS1), transcript variant X2, mRNA blastn 1068 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Moschidae Moschus Moschus berezovskii
7614041 7614041 PRJNA859990_S_NODE_13866_length_279_cov_3.058252_g13605_i0 PRJNA859990 13866 279 3.058252 8.53252308 Polypteridae 8289 Chordata Chordata 279 1.08e-70   NTclustered gi|2327581580|ref|XM_051922993.1| 27687 g13605 i0 86.142 13.6021505376344 267 27 95 6 10 273 1080 1339 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127526706), mRNA blastn 3795 279 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
8498787 8498787 PRJNA859990_S_NODE_18287_length_250_cov_0.870056_g18026_i0 PRJNA859990 18287 250 0.870056 2.17514 Alectoris rufa 9079 Chordata Chordata 381 2.5399999999999996e-101   NTclustered gi|2919603192|emb|OZ238773.1| 9079 g18026 i0 94.094 3.032 254 9 100 4 1 250 23469684 23469433 Alectoris rufa genome assembly, chromosome: 8 blastn 758 381 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
8498825 8498825 PRJNA859990_S_NODE_21747_length_242_cov_0.911243_g21486_i0 PRJNA859990 21747 242 0.911243 2.20520806 Rattus norvegicus 10116 Chordata Chordata 442 1.1099999999999995e-119   NTclustered gi|2678970781|ref|XM_006244808.5| 10116 g21486 i0 99.587 95.7066115702479 242 1 100 0 1 242 4104 3863 PREDICTED: Rattus norvegicus KAT8 regulatory NSL complex subunit 3 (Kansl3), transcript variant X4, mRNA blastn 23161 442 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
11049521 11049521 PRJNA859990_S_NODE_17949_length_251_cov_0.865169_g17688_i0 PRJNA859990 17949 251 0.865169 2.17157419 Aptenodytes forsteri 9233 Chordata Chordata 464 2.47e-126   NTclustered gi|1111008818|ref|XM_019473205.1| 9233 g17688 i0 100 12 251 0 100 0 1 251 1266 1516 PREDICTED: Aptenodytes forsteri ferric aerobactin receptor-like (LOC109279598), mRNA blastn 3012 464 1 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Aptenodytes Aptenodytes forsteri
11049545 11049545 PRJNA859990_S_NODE_19309_length_247_cov_1.212644_g19048_i0 PRJNA859990 19309 247 1.212644 2.99523068 Alligator mississippiensis 8496 Chordata Chordata 52.8 0.022   NTclustered gi|2580396278|ref|XM_019479236.2| 8496 g19048 i0 100 0.453441295546559 28 0 11 0 92 119 167 140 PREDICTED: Alligator mississippiensis LDL receptor related protein 8 (LRP8), transcript variant X4, mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
12325079 12325079 PRJNA859990_S_NODE_19930_length_246_cov_0.890173_g19669_i0 PRJNA859990 19930 246 0.890173 2.18982558 Rattus norvegicus 10116 Chordata Chordata 455 1.4500000000000002e-123   NTclustered gi|298880544|emb|FQ226305.1| 10116 g19669 i0 100 16.6707317073171 246 0 100 0 1 246 1374 1129 Rattus norvegicus TL0AEA2YK06 mRNA sequence blastn 4101 455 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
12325170 12325170 PRJNA859990_S_NODE_7390_length_366_cov_3.979522_g7129_i0 PRJNA859990 7390 366 3.979522 14.56505052 Hyla sarda 327740 Chordata Chordata 60.2 2.08e-4   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g7129 i0 97.143 2.4344262295082 35 1 10 0 138 172 3978 3944 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 891 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
14873820 14873820 PRJNA859990_S_NODE_15072_length_269_cov_1.647959_g14811_i0 PRJNA859990 15072 269 1.647959 4.43300971 Canis lupus 9612 Chordata Chordata 54.7 0.007   NTclustered gi|110347684|gb|AC183558.3| 9615 g14811 i0 100 0.107806691449814 29 0 11 0 114 142 124225 124197 Canis Familiaris chromosome 33, clone XX-400H14, complete sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
16148641 16148641 PRJNA859990_S_NODE_22173_length_241_cov_0.916667_g21912_i0 PRJNA859990 22173 241 0.916667 2.20916747 Meleagris gallopavo 9103 Chordata Chordata 309 1.17e-79   NTclustered gi|2721460868|emb|HG999686.4| 9103 g21912 i0 96.277 1.28630705394191 188 7 78 0 1 188 42595732 42595919 Meleagris gallopavo genome assembly, chromosome: 6 blastn 310 309 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
19972388 19972388 PRJNA859990_S_NODE_13676_length_281_cov_1.548077_g13415_i0 PRJNA859990 13676 281 1.548077 4.35009637 Cairina moschata 8855 Chordata Chordata 52.8 0.026   NTclustered gi|2921975556|gb|CP130394.1| 8855 g13415 i0 100 0.099644128113879 28 0 10 0 250 277 1455405 1455432 Cairina moschata breed yongchun chromosome 17 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
19972454 19972454 PRJNA859990_S_NODE_19036_length_248_cov_0.880000_g18775_i0 PRJNA859990 19036 248 0.88 2.1824 Orcinus orca 9733 Chordata Chordata 182 2.74e-41   NTclustered gi|2280631733|ref|XR_007469999.1| 9733 g18775 i0 80.315 20.25 254 39 100 11 1 248 119 367 PREDICTED: Orcinus orca uncharacterized LOC125960400 (LOC125960400), ncRNA blastn 5022 182 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca
19972457 19972457 PRJNA859990_S_NODE_19396_length_247_cov_0.885057_g19135_i0 PRJNA859990 19396 247 0.885057 2.18609079 Ursus arctos 9644 Chordata Chordata 154 5.95e-33   NTclustered gi|2517509858|ref|XR_008961382.1| 9644 g19135 i0 90.598 55.6275303643725 117 9 47 2 1 115 36863 36979 PREDICTED: Ursus arctos uncharacterized LOC130544787 (LOC130544787), ncRNA blastn 13740 154 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus arctos
21248043 21248043 PRJNA859990_S_NODE_21717_length_242_cov_0.911243_g21456_i0 PRJNA859990 21717 242 0.911243 2.20520806 Alectoris rufa 9079 Chordata Chordata 364 2.4699999999999992e-96   NTclustered gi|2919602046|emb|OZ238769.1| 9079 g21456 i0 93.802 3.85123966942149 242 15 100 0 1 242 38605009 38605250 Alectoris rufa genome assembly, chromosome: 4 blastn 932 364 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
21248098 21248098 PRJNA859990_S_NODE_4897_length_439_cov_4.248634_g4636_i0 PRJNA859990 4897 439 4.248634 18.65150326 Spinus spinus 160760 Chordata Chordata 54.7 0.012   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g4636 i0 94.444 0.164009111617312 36 1 8 1 243 277 37205157 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
22522609 22522609 PRJNA859990_S_NODE_17878_length_251_cov_0.865169_g17617_i0 PRJNA859990 17878 251 0.865169 2.17157419 Canis lupus 9612 Chordata Chordata 459 1.1499999999999996e-124   NTclustered gi|2272592359|ref|XR_007404045.1| 286419 g17617 i0 99.602 1 251 1 100 0 1 251 1992 1742 PREDICTED: Canis lupus dingo uncharacterized LOC125753076 (LOC125753076), ncRNA blastn 251 459 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
22522667 22522667 PRJNA859990_S_NODE_22298_length_241_cov_0.869048_g22037_i0 PRJNA859990 22298 241 0.869048 2.09440568 Rattus norvegicus 10116 Chordata Chordata 446 8.519999999999999e-121   NTclustered gi|298887469|emb|FQ226831.1| 10116 g22037 i0 100 8.24896265560166 241 0 100 0 1 241 259 19 Rattus norvegicus TL0AEA1YE02 mRNA sequence blastn 1988 446 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
23798137 23798137 PRJNA859990_S_NODE_21499_length_242_cov_1.579882_g21238_i0 PRJNA859990 21499 242 1.579882 3.82331444 Alectoris rufa 9079 Chordata Chordata 355 1.48e-93   NTclustered gi|2919603477|emb|OZ238776.1| 9079 g21238 i0 93.802 1.99173553719008 242 5 100 3 1 242 18810785 18810554 Alectoris rufa genome assembly, chromosome: 11 blastn 482 355 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
23798189 23798189 PRJNA859990_S_NODE_4179_length_468_cov_3.296203_g3919_i0 PRJNA859990 4179 468 3.296203 15.42623004 Mus musculus 10090 Chordata Chordata 669 0   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g3919 i0 100 7.45512820512821 362 0 77 0 107 468 384 23 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3489 669 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25072017 25072017 PRJNA859990_S_NODE_19040_length_248_cov_0.880000_g18779_i0 PRJNA859990 19040 248 0.88 2.1824 Mus musculus 10090 Chordata Chordata 52.8 0.022   NTclustered gi|2550682265|ref|NG_150166.2| 10090 g18779 i0 100 0.903225806451613 28 0 11 0 78 105 965 938 Mus musculus STARR-seq mESC enhancer starr_02864 (LOC128924391) on chromosome 1 blastn 224 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;