RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA859990" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA859990 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5949224 5949224 PRJNA859990_S_NODE_19865_length_246_cov_0.890173_g19604_i0 PRJNA859990 19865 246 0.890173 2.18982558 Peredibacter starrii 28202 Bacteria Bacteria 353 5.44e-93   NTclustered gi|2631252187|gb|CP139487.1| 28202 g19604 i0 92.653 3.99186991869919 245 18 99 0 2 246 512231 512475 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 982 353 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
9774077 9774077 PRJNA859990_S_NODE_9128_length_334_cov_1.394636_g8867_i0 PRJNA859990 9128 334 1.394636 4.65808424 Peredibacter starrii 28202 Bacteria Bacteria 595 1.1599999999999998e-165   NTclustered gi|2631252187|gb|CP139487.1| 28202 g8867 i0 98.802 204.245508982036 334 4 100 0 1 334 513055 512722 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 68218 595 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
12325154 12325154 PRJNA859990_S_NODE_5750_length_410_cov_1.317507_g5489_i0 PRJNA859990 5750 410 1.317507 5.4017787 Peredibacter starrii 28202 Bacteria Bacteria 721 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g5489 i0 98.301 115.956097560976 412 5 100 1 1 410 511821 512232 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 47542 721 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
14873842 14873842 PRJNA859990_S_NODE_16752_length_257_cov_1.434783_g16491_i0 PRJNA859990 16752 257 1.434783 3.68739231 Peredibacter starrii 28202 Bacteria Bacteria 414 2.59e-111   NTclustered gi|2631252187|gb|CP139487.1| 28202 g16491 i0 96.063 91.9455252918288 254 10 99 0 4 257 511302 511049 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 23630 414 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
14873893 14873893 PRJNA859990_S_NODE_21492_length_242_cov_1.621302_g21231_i0 PRJNA859990 21492 242 1.621302 3.92355084 Bdellovibrio sp. HAGR004 3113895 Bacteria Bacteria 243 1.2100000000000004e-59   NTclustered gi|2663432256|dbj|AP029176.1| 3113895 g21231 i0 88.5 2.73140495867769 200 23 83 0 3 202 2579000 2579199 Bdellovibrio sp. HAGR004 DNA, complete genome blastn 661 243 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HAGR004
20362586 20362586 PRJNA859990_S_NODE_6016_length_401_cov_1.945122_g5755_i0 PRJNA859990 6016 401 1.945122 7.79993922 Peredibacter 263370 Bacteria Bacteria 667 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g5755 i0 96.758 219.476309226933 401 12 100 1 1 401 511581 511980 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 88010 667 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;