RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA859990" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 9 ✖

bioproject 1

  • PRJNA859990 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
845899 845899 PRJNA859990_S_NODE_2341_length_603_cov_1.967925_g2085_i0 PRJNA859990 2341 603 1.967925 11.86658775 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 939 0   NTclustered gi|985614202|gb|CP010834.1| 1609968 g2085 i0 94.868 69.8789386401327 604 26 100 5 1 603 494571 495170 Methanobrevibacter sp. YE315, complete genome blastn 42137 939 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
2511589 2511589 PRJNA859990_S_NODE_15862_length_263_cov_1.531579_g15601_i0 PRJNA859990 15862 263 1.531579 4.02805277 Methanobrevibacter 2172 Archaea Archaea 335 2.129999999999999e-87   NTclustered gi|1294447101|gb|CP017803.1| 2173 g15601 i0 100 89.106463878327 181 0 69 0 11 191 266547 266367 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 23435 335 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
4674298 4674298 PRJNA859990_S_NODE_15724_length_264_cov_2.450262_g15463_i0 PRJNA859990 15724 264 2.450262 6.46869168 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 399 7.479999999999998e-107   NTclustered gi|985614202|gb|CP010834.1| 1609968 g15463 i0 93.962 96.1856060606061 265 14 100 2 1 264 496019 496282 Methanobrevibacter sp. YE315, complete genome blastn 25393 399 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
6339973 6339973 PRJNA859990_S_NODE_11445_length_303_cov_1.004348_g11184_i0 PRJNA859990 11445 303 1.004348 3.04317444 root 1 Root_unresolved Root_unresolved 560 3.79e-155   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g11184 i0 100 10.6105610561056 303 0 100 0 1 303 4238 3936 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 3215 560 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
7224197 7224197 PRJNA859990_S_NODE_7926_length_355_cov_1.411348_g7665_i0 PRJNA859990 7926 355 1.411348 5.0102854 Candidatus Methanoplasma termitum 1577791 Archaea Archaea 383 1.0499999999999998e-101   NTclustered gi|731480732|gb|CP010070.1| 1577791 g7665 i0 98.611 319.047887323944 216 3 61 0 71 286 162129 162344 Candidatus Methanoplasma termitum strain MpT1, complete genome blastn 113262 383 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanoplasma Candidatus Methanoplasma termitum
12715654 12715654 PRJNA859990_S_NODE_19670_length_246_cov_1.537572_g19409_i0 PRJNA859990 19670 246 1.537572 3.78242712 Methanobrevibacter 2172 Archaea Archaea 444 3.14e-120   NTclustered gi|968564921|gb|CP011266.1| 230361 g19409 i0 99.187 161.979674796748 246 2 100 0 1 246 543076 543321 Methanobrevibacter millerae strain SM9, complete genome blastn 39847 444 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
17813684 17813684 PRJNA859990_S_NODE_6314_length_393_cov_1.593750_g6053_i0 PRJNA859990 6314 393 1.59375 6.2634375 Methanobrevibacter 2172 Archaea Archaea 704 0   NTclustered gi|968564921|gb|CP011266.1| 230361 g6053 i0 98.982 144.534351145038 393 4 100 0 1 393 542667 542275 Methanobrevibacter millerae strain SM9, complete genome blastn 56802 704 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
19972590 19972590 PRJNA859990_S_NODE_8376_length_346_cov_3.098901_g8115_i0 PRJNA859990 8376 346 3.098901 10.72219746 uncultured Methanocorpusculum sp. 176309 Archaea Archaea 259 1.8e-64   NTclustered gi|2621786121|emb|OY782579.1| 176309 g8115 i0 89.1 332.115606936416 211 19 60 3 65 272 98154 98363 MAG: uncultured Methanocorpusculum sp. isolate 00e4b8a3-32d7-4b6d-ae68-a36d250ebca6 genome assembly, chromosome: 1 blastn 114912 259 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum uncultured Methanocorpusculum sp.
25072152 25072152 PRJNA859990_S_NODE_8300_length_348_cov_1.469091_g8039_i0 PRJNA859990 8300 348 1.469091 5.11243668 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 204 8.599999999999999e-48   NTclustered gi|985614202|gb|CP010834.1| 1609968 g8039 i0 89.937 171.988505747126 159 15 46 1 124 282 1994660 1994503 Methanobrevibacter sp. YE315, complete genome blastn 59852 204 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;