RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA859990" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJNA859990 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3788096 3788096 PRJNA859990_S_NODE_7363_length_367_cov_1.697279_g7102_i0 PRJNA859990 7363 367 1.697279 6.22901393 Naegleria 5761 Heterolobosea other_Eukaryota 139 2.6e-28   NTclustered gi|2618963742|gb|OR769034.1| 5762 g7102 i0 84.507 22.2506811989101 142 21 39 1 225 366 5057 5197 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 8166 139 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8498732 8498732 PRJNA859990_S_NODE_13467_length_283_cov_1.285714_g13206_i0 PRJNA859990 13467 283 1.285714 3.63857062 Lula levis 2939029 Heterolobosea other_Eukaryota 95.3 4.28e-15   NTclustered gi|2234449040|gb|ON417697.1| 2939029 g13206 i0 77.987 37.2155477031802 159 29 55 6 103 257 1480 1324 Lula levis strain HFCC 1607 large subunit ribosomal RNA gene, partial sequence blastn 10532 95.3 1 Eukaryota Discoba   Heterolobosea     Percolomonadidae Lula Lula levis
12325058 12325058 PRJNA859990_S_NODE_18390_length_249_cov_12.994318_g18129_i0 PRJNA859990 18390 249 12.994318 32.35585182 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 453 5.29e-123   NTclustered gi|529154115|gb|EU266548.2| 500012 g18129 i0 99.598 71.0562248995984 249 0 100 1 1 249 1525 1772 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 17693 453 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
12325137 12325137 PRJNA859990_S_NODE_4450_length_456_cov_5.375979_g4189_i0 PRJNA859990 4450 456 5.375979 24.51446424 Allovahlkampfia sp. S35YCH 2919519 Heterolobosea other_Eukaryota 800 0   NTclustered gi|2199280130|dbj|LC683687.1| 2919519 g4189 i0 98.462 39.3706140350877 455 5 99 1 1 455 1 453 Allovahlkampfia sp. S35YCH gene for 18S ribosomal RNA, partial sequence blastn 17953 800 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. S35YCH
16148714 16148714 PRJNA859990_S_NODE_6733_length_382_cov_2.899676_g6472_i0 PRJNA859990 6733 382 2.899676 11.07676232 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 678 0   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g6472 i0 98.691 29.9214659685864 382 5 100 0 1 382 3347 3728 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11430 678 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17424040 17424040 PRJNA859990_S_NODE_2054_length_637_cov_2.820922_g1801_i0 PRJNA859990 2054 637 2.820922 17.96927314 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 985 0   NTclustered gi|529154115|gb|EU266548.2| 500012 g1801 i0 97.902 74.0753532182104 572 7 90 5 1 571 1369 802 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 47186 985 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
17424077 17424077 PRJNA859990_S_NODE_2594_length_574_cov_2.111776_g2338_i0 PRJNA859990 2594 574 2.111776 12.12159424 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 880 0   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g2338 i0 94.58 22.6271777003484 572 26 99 5 1 571 3794 4361 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12988 880 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
17424155 17424155 PRJNA859990_S_NODE_8474_length_344_cov_2.439114_g8213_i0 PRJNA859990 8474 344 2.439114 8.39055216 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 363 1.32e-95   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g8213 i0 85.838 3.86046511627907 346 44 100 2 1 344 2414 2756 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1328 363 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;