RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA857857 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16148236 16148236 PRJNA857857_P_NODE_9233_length_514_cov_1.190476_g8802_i0 PRJNA857857 9233 514 1.190476 6.11904664 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 71.3 1.39e-7   NTclustered gi|325196873|emb|FR827661.1| 890382 g8802 i0 100 13.0739299610895 38 0 7 0 467 504 65 28 Albugo laibachii Nc14, genomic contig CONTIG_4828_NC14_v4_162_619 blastn 6720 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
25070873 25070873 PRJNA857857_P_NODE_18100_length_369_cov_1.375000_g17652_i0 PRJNA857857 18100 369 1.375 5.07375 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 427 4.99e-115   NTclustered gi|2795021165|ref|XM_067935669.1| 4785 g17652 i0 92.617 18.6693766937669 298 21 80 1 1 297 317 20 Phytophthora cinnamomi ATP synthase subunit beta, mitochondrial (IUM83_11126), partial mRNA blastn 6889 427 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;