RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA857857 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
845441 845441 PRJNA857857_P_NODE_51221_length_241_cov_0.916667_g50772_i0 PRJNA857857 51221 241 0.916667 2.20916747 Anaeromyxobacter paludicola 2918171 Bacteria Bacteria 84.2 7.69e-12   NTclustered gi|2199271117|dbj|AP025592.1| 2918171 g50772 i0 89.706 0.514522821576763 68 3 27 4 17 82 686027 685962 Anaeromyxobacter paludicola DNA, complete genome blastn 124 84.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola
5948156 5948156 PRJNA857857_P_NODE_24025_length_318_cov_2.391837_g23576_i0 PRJNA857857 24025 318 2.391837 7.60604166 Archangium gephyra 48 Bacteria Bacteria 52.8 0.03   NTclustered gi|827418478|gb|CP011509.1| 48 g23576 i0 96.875 0.10062893081761 32 0 10 1 36 67 1002511 1002481 Archangium gephyra strain DSM 2261, complete genome blastn 32 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
6339593 6339593 PRJNA857857_P_NODE_26505_length_301_cov_1.973684_g26056_i0 PRJNA857857 26505 301 1.973684 5.94078884 Corallococcus 83461 Bacteria Bacteria 385 2.43e-102   NTclustered gi|1561763003|gb|CP034669.1| 184914 g26056 i0 90.722 238.651162790698 291 24 96 3 1 290 143045 142757 Corallococcus coralloides strain B035 chromosome, complete genome blastn 71834 385 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;