RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA857857 · 20 ✖

analysis 1

  • blastn · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2120685 2120685 PRJNA857857_P_NODE_44142_length_246_cov_0.890173_g43693_i0 PRJNA857857 44142 246 0.890173 2.18982558 Mus musculus 10090 Chordata Chordata 52.8 0.022   NTclustered gi|46931410|gb|AC124662.10| 10090 g43693 i0 100 0.227642276422764 28 0 11 0 171 198 9820 9847 Mus musculus chromosome 9, clone RP24-409K22, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
2120794 2120794 PRJNA857857_P_NODE_49542_length_242_cov_0.911243_g49093_i0 PRJNA857857 49542 242 0.911243 2.20520806 Mus musculus 10090 Chordata Chordata 62.1 3.62e-5   NTclustered gi|58036719|gb|AC150277.2| 10090 g49093 i0 92.857 0.776859504132231 42 3 25 0 1 42 102046 102005 Mus musculus BAC clone RP23-97E12 from 18, complete sequence blastn 188 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4673601 4673601 PRJNA857857_P_NODE_37724_length_251_cov_0.865169_g37275_i0 PRJNA857857 37724 251 0.865169 2.17157419 Lampetra planeri 7750 Chordata Chordata 52.8 0.023   NTclustered gi|2805724034|emb|OZ078501.1| 7750 g37275 i0 100 0.111553784860558 28 0 11 0 1 28 1070259 1070232 Lampetra planeri genome assembly, chromosome: 16 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
7223367 7223367 PRJNA857857_P_NODE_39526_length_249_cov_0.875000_g39077_i0 PRJNA857857 39526 249 0.875 2.17875 Meleagris gallopavo 9103 Chordata Chordata 56.5 0.002   NTclustered gi|2721460928|emb|HG999701.4| 9103 g39077 i0 100 0.120481927710843 30 0 12 0 16 45 2677439 2677410 Meleagris gallopavo genome assembly, chromosome: 21 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
7613726 7613726 PRJNA857857_P_NODE_32726_length_269_cov_0.714286_g32277_i0 PRJNA857857 32726 269 0.714286 1.92142934 Opisthokonta 33154 Chordata Chordata 60.2 1.47e-4   NTclustered gi|2815003689|emb|OZ078618.2| 7748 g32277 i0 100 3.48327137546468 32 0 12 0 14 45 5413233 5413202 Lampetra fluviatilis genome assembly, chromosome: 50 blastn 937 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
9773513 9773513 PRJNA857857_P_NODE_52008_length_241_cov_0.916667_g51559_i0 PRJNA857857 52008 241 0.916667 2.20916747 Pyrrhula murina 928672 Chordata Chordata 52.8 0.022   NTclustered gi|2920008266|emb|OZ238999.1| 928672 g51559 i0 100 0.116182572614108 28 0 12 0 44 71 37886182 37886155 Pyrrhula murina genome assembly, chromosome: 5 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Pyrrhula Pyrrhula murina
9773517 9773517 PRJNA857857_P_NODE_52328_length_236_cov_2.527607_g51879_i0 PRJNA857857 52328 236 2.527607 5.96515252 Mus musculus 10090 Chordata Chordata 56.5 0.002   NTclustered gi|354796471|gb|JN960972.1| 10090 g51879 i0 100 0.76271186440678 30 0 13 0 57 86 11138 11167 Mus musculus targeted non-conditional, lacZ-tagged mutant allele Gpr182:tm2e(KOMP)Wtsi; transgenic blastn 180 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10164149 10164149 PRJNA857857_P_NODE_27068_length_298_cov_1.177778_g26619_i0 PRJNA857857 27068 298 1.177778 3.50977844 Cheloniidae 8465 Chordata Chordata 69.4 2.75e-7   NTclustered gi|2911503638|emb|OZ223614.1| 8472 g26619 i0 95.455 8.2248322147651 44 1 14 1 68 110 3311249 3311292 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 28 blastn 2451 69.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
10164343 10164343 PRJNA857857_P_NODE_44108_length_246_cov_0.890173_g43659_i0 PRJNA857857 44108 246 0.890173 2.18982558 Canis 9611 Chordata Chordata 213 9.63e-51   NTclustered gi|148800006|gb|AC189709.15| 9615 g43659 i0 93.103 72.6544715447154 145 10 59 0 97 241 15009 15153 Canis familiaris chromosome X, clone XX-272C1, complete sequence blastn 17873 213 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
12324208 12324208 PRJNA857857_P_NODE_29930_length_282_cov_1.473684_g29481_i0 PRJNA857857 29930 282 1.473684 4.15578888 Anas platyrhynchos 8839 Chordata Chordata 516 7.67e-142   NTclustered gi|1944862811|ref|XM_038181708.1| 8839 g29481 i0 99.645 98.5992907801418 282 1 100 0 1 282 2078 1797 PREDICTED: Anas platyrhynchos microsomal triglyceride transfer protein-like (LOC101805352), mRNA blastn 27805 516 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
14873206 14873206 PRJNA857857_P_NODE_40632_length_248_cov_1.760000_g40183_i0 PRJNA857857 40632 248 1.76 4.3648 Rhea pennata 8795 Chordata Chordata 174 4.59e-39   NTclustered gi|2664001638|ref|XM_062583343.1| 8795 g40183 i0 80.426 29.9556451612903 235 40 94 5 17 248 409 178 PREDICTED: Rhea pennata RAB11A, member RAS oncogene family (RAB11A), transcript variant X2, mRNA blastn 7429 174 1 Eukaryota Opisthokonta Metazoa Chordata Aves Rheiformes Rheidae Rhea Rhea pennata
18696612 18696612 PRJNA857857_P_NODE_41615_length_248_cov_0.880000_g41166_i0 PRJNA857857 41615 248 0.88 2.1824 Cairina moschata 8855 Chordata Chordata 320 5.57e-83   NTclustered gi|2921976101|gb|CP130420.1| 8855 g41166 i0 97.34 0.923387096774194 188 5 92 0 61 248 59897806 59897619 Cairina moschata breed yongchun chromosome 5 blastn 229 320 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
19971754 19971754 PRJNA857857_P_NODE_39656_length_249_cov_0.875000_g39207_i0 PRJNA857857 39656 249 0.875 2.17875 Gallus gallus 9031 Chordata Chordata 455 1.47e-123   NTclustered gi|2201786186|ref|XM_040666916.2| 9031 g39207 i0 99.598 98.8674698795181 249 1 100 0 1 249 1405 1653 PREDICTED: Gallus gallus consortin, connexin sorting protein (CNST), transcript variant X1, mRNA blastn 24618 455 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
20362129 20362129 PRJNA857857_P_NODE_39336_length_249_cov_1.113636_g38887_i0 PRJNA857857 39336 249 1.113636 2.77295364 Opisthokonta 33154 Chordata Chordata 56.5 0.002   NTclustered gi|1003751488|ref|XM_015854266.1| 93934 g38887 i0 96.97 2.99196787148594 33 1 13 0 182 214 2043 2075 PREDICTED: Coturnix japonica zinc finger protein 830-like (LOC107309444), mRNA blastn 745 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Coturnix Coturnix japonica
21247234 21247234 PRJNA857857_P_NODE_34017_length_262_cov_1.222222_g33568_i0 PRJNA857857 34017 262 1.222222 3.20222164 Lonchura striata 40157 Chordata Chordata 63.9 1.1e-5   NTclustered gi|1209976941|ref|XM_021525831.1| 40157 g33568 i0 95.122 5.00381679389313 41 0 15 2 10 49 1223 1262 PREDICTED: Lonchura striata checkpoint kinase 1 (CHEK1), mRNA blastn 1311 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Lonchura Lonchura striata
21637879 21637879 PRJNA857857_P_NODE_46197_length_245_cov_0.895349_g45748_i0 PRJNA857857 46197 245 0.895349 2.19360505 Metazoa 33208 Chordata Chordata 54.7 0.006   NTclustered gi|57470750|gb|AC131338.4| 10090 g45748 i0 100 0.726530612244898 29 0 12 0 89 117 11843 11871 Mus musculus BAC clone RP23-29O10 from 18, complete sequence blastn 178 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22913247 22913247 PRJNA857857_P_NODE_23638_length_321_cov_1.241935_g23189_i0 PRJNA857857 23638 321 1.241935 3.98661135 Aves 8782 Chordata Chordata 84.2 1.07e-11   NTclustered gi|2499815549|ref|XR_003555283.2| 8954 g23189 i0 85.185 24.9750778816199 81 12 25 0 241 321 793 713 PREDICTED: Falco peregrinus zinc finger DHHC-type palmitoyltransferase 20 (ZDHHC20), transcript variant X2, misc_RNA blastn 8017 84.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Falconiformes Falconidae Falco Falco peregrinus
23797559 23797559 PRJNA857857_P_NODE_47059_length_244_cov_0.900585_g46610_i0 PRJNA857857 47059 244 0.900585 2.1974274 Cairina moschata 8855 Chordata Chordata 259 1.21e-64   NTclustered gi|2921976101|gb|CP130420.1| 8855 g46610 i0 95.652 1 161 7 100 0 84 244 59887193 59887033 Cairina moschata breed yongchun chromosome 5 blastn 244 259 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
23797611 23797611 PRJNA857857_P_NODE_49399_length_242_cov_1.479290_g48950_i0 PRJNA857857 49399 242 1.47929 3.5798818 Meriones unguiculatus 10047 Chordata Chordata 52.8 0.022   NTclustered gi|2599573951|ref|XM_021634657.2| 10047 g48950 i0 100 1.15702479338843 28 0 12 0 86 113 7473 7446 PREDICTED: Meriones unguiculatus RNA binding motif single stranded interacting protein 3 (Rbms3), transcript variant X12, mRNA blastn 280 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus
24187238 24187238 PRJNA857857_P_NODE_30559_length_279_cov_1.427184_g30110_i0 PRJNA857857 30559 279 1.427184 3.98184336 Phyllostomus 9422 Chordata Chordata 52.8 0.026   NTclustered gi|2177209624|ref|XM_045847513.1| 9423 g30110 i0 100 0.301075268817204 28 0 10 0 15 42 1509 1482 PREDICTED: Phyllostomus hastatus WASP like actin nucleation promoting factor (WASL), transcript variant X2, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus hastatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;