RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA857857 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11439448 11439448 PRJNA857857_P_NODE_3249_length_839_cov_1.898172_g2893_i0 PRJNA857857 3249 839 1.898172 15.92566308 root 1 Root_unresolved Root_unresolved 58.4 0.002   NTclustered gi|2082245668|ref|XM_043062529.1| 3055 g2893 i0 91.111 0.557806912991657 45 1 5 1 387 428 1430 1386 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_05g246950v5), mRNA blastn 468 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
25071142 25071142 PRJNA857857_P_NODE_31500_length_274_cov_3.248756_g31051_i0 PRJNA857857 31500 274 3.248756 8.90159144 Chloropicon roscoffensis 1461544 Plants Plants 287 6.34e-73   NTclustered gi|2863408599|gb|CP145443.1| 1461544 g31051 i0 85.714 421.408759124088 273 37 99 2 1 272 365721 365992 Chloropicon roscoffensis strain CCMP1998 chromosome 3 blastn 115466 287 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;