RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA857857 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4673663 4673663 PRJNA857857_P_NODE_40564_length_249_cov_0.875000_g40115_i0 PRJNA857857 40564 249 0.875 2.17875 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 180 9.91e-41   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g40115 i0 83.085 3.19678714859438 201 30 80 4 34 232 4285999 4285801 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 796 180 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
9773347 9773347 PRJNA857857_P_NODE_44228_length_246_cov_0.890173_g43779_i0 PRJNA857857 44228 246 0.890173 2.18982558 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 95.3 3.64e-15   NTclustered gi|2874253692|emb|OY969418.1| 171953 g43779 i0 82.569 2.79674796747967 109 18 45 1 47 155 1974333 1974226 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 688 95.3 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25071504 25071504 PRJNA857857_P_NODE_48960_length_243_cov_0.905882_g48511_i0 PRJNA857857 48960 243 0.905882 2.20129326 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 167 7.5e-37   NTclustered gi|2874254167|emb|OY970399.1| 171953 g48511 i0 80.263 0.938271604938272 228 40 93 5 14 238 645223 644998 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.6 genome assembly, chromosome: 1 blastn 228 167 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;