RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA857857 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
844659 844659 PRJNA857857_P_NODE_11661_length_461_cov_2.144330_g11221_i0 PRJNA857857 11661 461 2.14433 9.8853613 Deinococcus ficus 317577 Bacteria Bacteria 682 0   NTclustered gi|1220362168|gb|CP021081.1| 317577 g11221 i0 93.492 249.765726681128 461 27 100 3 1 461 2341695 2341238 Deinococcus ficus strain CC-FR2-10, complete genome blastn 115142 682 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
6339400 6339400 PRJNA857857_P_NODE_13725_length_425_cov_1.275568_g13279_i0 PRJNA857857 13725 425 1.275568 5.421164 Deinococcus 1298 Bacteria Bacteria 647 0   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g13279 i0 94.326 218.298823529412 423 23 100 1 3 425 73255 72834 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 92777 652 0.992331288343558 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
6339822 6339822 PRJNA857857_P_NODE_52345_length_235_cov_3.481481_g51896_i0 PRJNA857857 52345 235 3.481481 8.18148035 Deinococcus 1298 Bacteria Bacteria 431 2.3199999999999998e-116   NTclustered gi|1142915234|gb|KX832182.1| 47478 g51896 i0 100 103.123404255319 233 0 99 0 1 233 635 867 Deinococcus sp. strain 311:FR1_AP2_32 16S ribosomal RNA gene, partial sequence blastn 24234 431 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
10164175 10164175 PRJNA857857_P_NODE_28628_length_289_cov_1.069444_g28179_i0 PRJNA857857 28628 289 1.069444 3.09069316 Deinococcus 1298 Bacteria Bacteria 501 2.21e-137   NTclustered gi|470486828|ref|NR_076782.1| 502394 g28179 i0 97.931 274.944636678201 290 5 100 1 1 289 22 311 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 79459 501 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
11439475 11439475 PRJNA857857_P_NODE_34609_length_259_cov_1.413978_g34160_i0 PRJNA857857 34609 259 1.413978 3.66220302 Deinococcus 1298 Bacteria Bacteria 183 8.02e-42   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g34160 i0 80.224 103.065637065637 268 34 98 14 1 254 1452696 1452434 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 26694 183 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
16537985 16537985 PRJNA857857_P_NODE_11333_length_467_cov_1.850254_g10893_i0 PRJNA857857 11333 467 1.850254 8.64068618 Deinococcus 1298 Bacteria Bacteria 846 0   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g10893 i0 99.358 350.081370449679 467 3 100 0 1 467 1454568 1454102 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 163488 846 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
20362220 20362220 PRJNA857857_P_NODE_51316_length_241_cov_0.916667_g50867_i0 PRJNA857857 51316 241 0.916667 2.20916747 Truepera 332248 Bacteria Bacteria 80.5 9.95e-11   NTclustered gi|2573973991|gb|CP133611.1| 332249 g50867 i0 94.231 0.443983402489627 52 3 22 0 187 238 2169505 2169556 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 107 80.5 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;