RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA857857 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12324457 12324457 PRJNA857857_P_NODE_42790_length_247_cov_0.885057_g42341_i0 PRJNA857857 42790 247 0.885057 2.18609079 Chrocaturd virus 3129638 Viruses Viruses 329 9.21e-86   NTclustered gi|2717318092|gb|PP172086.1| 3129638 g42341 i0 90.688 191.65991902834 247 23 100 0 1 247 3108 3354 MAG: Chrocaturd virus isolate CC1C_k141_57646 genomic sequence blastn 47340 329 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocaturd virus
12324720 12324720 PRJNA857857_P_NODE_790_length_1474_cov_20.765882_g618_i0 PRJNA857857 790 1474 20.765882 306.08910068 Emaravirus pyri 2845775 Viruses Viruses 1502 0   NTclustered gi|1867190380|gb|MN873587.2| 2603627 g618 i0 98.7 44.1567164179104 846 11 57 0 374 1219 1 846 Pear chlorotic leaf spot-associated virus isolate PCLSaV/HB P5 protein gene, complete cds blastn 65087 1502 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Fimoviridae Emaravirus Emaravirus pyri
25071473 25071473 PRJNA857857_P_NODE_47400_length_244_cov_0.900585_g46951_i0 PRJNA857857 47400 244 0.900585 2.1974274 Bat rotavirus 1340801 Viruses Viruses 52.8 0.022   NTclustered gi|1988244386|gb|MT815964.1| 1340801 g46951 i0 100 0.229508196721311 28 0 11 0 204 231 338 311 Bat rotavirus isolate BatRVH/Bat-wt/CH/Myo_dau/2019 VP2 (VP2) gene, complete cds blastn 56 52.8 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Bat rotavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;