RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA857857" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA857857 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5948320 5948320 PRJNA857857_P_NODE_31345_length_275_cov_1.475248_g30896_i0 PRJNA857857 31345 275 1.475248 4.056932 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 316 8.12e-82   NTclustered gi|290973660|ref|XM_002669520.1| 5762 g30896 i0 88.258 0.96 264 31 96 0 7 270 2125 1862 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82118), mRNA blastn 264 316 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6339742 6339742 PRJNA857857_P_NODE_40905_length_248_cov_0.880000_g40456_i0 PRJNA857857 40905 248 0.88 2.1824 Leishmania 5658 Euglenozoa other_Eukaryota 219 2.0899999999999994e-52   NTclustered gi|2794986241|ref|XM_067853970.1| 2802991 g40456 i0 82.927 39.8508064516129 246 38 98 4 1 244 304 61 Leishmania sp. Namibia uncharacterized protein (JIQ42_05862), partial mRNA blastn 9883 219 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;