RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

bioproject 1

  • PRJNA857143 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8496685 8496685 PRJNA857143_S_NODE_193967_length_242_cov_1.384615_g192874_i0 PRJNA857143 193967 242 1.384615 3.3507683 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.022   NTclustered gi|323706731|gb|CP002529.1| 985053 g192874 i0 100 0.115702479338843 28 0 12 0 142 169 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
11047315 11047315 PRJNA857143_S_NODE_184589_length_246_cov_1.410405_g183496_i0 PRJNA857143 184589 246 1.410405 3.4695963 Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016) 1867261 Archaea Archaea 58.4 4.78e-4   NTclustered gi|2551788334|gb|CP130488.1| 1867261 g183496 i0 100 0.98780487804878 31 0 13 0 60 90 1063606 1063636 MAG: Candidatus Methanosuratincola petrocarbonis isolate LWZ-6 chromosome, complete genome blastn 243 58.4 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanosuratincola (ex Vanwonterghem et al. 2016) Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016)
13597457 13597457 PRJNA857143_S_NODE_186431_length_245_cov_2.267442_g185338_i0 PRJNA857143 186431 245 2.267442 5.5552329 Thermococcus piezophilus 1712654 Archaea Archaea 52.8 0.022   NTclustered gi|1029171485|gb|CP015520.1| 1712654 g185338 i0 100 0.114285714285714 28 0 11 0 133 160 717341 717368 Thermococcus piezophilus strain CDGS chromosome, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus piezophilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;