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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA857143 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2118287 2118287 PRJNA857143_S_NODE_105082_length_307_cov_3.128205_g103989_i0 PRJNA857143 105082 307 3.128205 9.60358935 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 134 9.94e-27   NTclustered gi|695411611|ref|XM_009527227.1| 67593 g103989 i0 83.108 3.5928338762215 148 23 48 2 94 240 343 197 Phytophthora sojae hypothetical protein mRNA blastn 1103 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
2119121 2119121 PRJNA857143_S_NODE_186802_length_245_cov_1.651163_g185709_i0 PRJNA857143 186802 245 1.651163 4.04534935 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.02e-5   NTclustered gi|2795044158|ref|XM_067924075.1| 4785 g185709 i0 95 0.163265306122449 40 2 16 0 184 223 536 497 Phytophthora cinnamomi 60S ribosomal protein L9 (IUM83_00313), partial mRNA blastn 40 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
2510834 2510834 PRJNA857143_S_NODE_173482_length_251_cov_1.280899_g172389_i0 PRJNA857143 173482 251 1.280899 3.21505649 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.04e-10   NTclustered gi|813157758|ref|XM_012346838.1| 695850 g172389 i0 90.164 1.09561752988048 61 6 24 0 191 251 425 365 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S13 mRNA blastn 275 80.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11046576 11046576 PRJNA857143_S_NODE_11289_length_650_cov_1.630849_g10280_i0 PRJNA857143 11289 650 1.630849 10.6005185 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 481 6.96e-131   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g10280 i0 80.769 78.3030769230769 650 96 98 20 7 643 2196 1563 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 50897 481 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
12323277 12323277 PRJNA857143_S_NODE_430_length_1789_cov_47.469114_g323_i0 PRJNA857143 430 1789 47.469114 849.22244946 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 313 7.66e-80   NTclustered gi|328802538|emb|FR832890.1| 890382 g323 i0 83.095 20.575181665735 349 54 19 5 1443 1789 2002 1657 Albugo laibachii Nc14, mitochondrial genomic contig NODE_36_length_2553_cov_1396.121460 blastn 36809 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14871603 14871603 PRJNA857143_S_NODE_181332_length_248_cov_0.891429_g180239_i0 PRJNA857143 181332 248 0.891429 2.21074392 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 196 9.79e-46   NTclustered gi|813177544|ref|XM_012349852.1| 695850 g180239 i0 81.857 6.44758064516129 237 39 95 4 14 248 1219 985 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1599 196 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
14872551 14872551 PRJNA857143_S_NODE_92_length_2684_cov_31.775565_g59_i0 PRJNA857143 92 2684 31.775565 852.8561646 Phytophthora hedraiandra 295481 SAR_Eukaryotes SAR_Eukaryotes 540 4.879999999999998e-148   NTclustered gi|2314988701|ref|NC_067067.1| 295481 g59 i0 75.098 42.6039493293592 1273 258 46 51 5 1247 33226 31983 Phytophthora hedraiandra voucher CBS111725 mitochondrion, complete genome blastn 114349 540 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora hedraiandra
16146260 16146260 PRJNA857143_S_NODE_172773_length_251_cov_1.752809_g171680_i0 PRJNA857143 172773 251 1.752809 4.39955059 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 187 5.98e-43   NTclustered gi|813141452|ref|XM_012343573.1| 695850 g171680 i0 84.946 15.4183266932271 186 26 74 2 1 185 583 767 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L8 mRNA blastn 3870 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
16146670 16146670 PRJNA857143_S_NODE_34333_length_445_cov_8.086022_g33241_i0 PRJNA857143 34333 445 8.086022 35.9827979 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 159 2.47e-34   NTclustered gi|669146817|ref|XM_008610749.1| 1156394 g33241 i0 77.622 7.33932584269663 286 48 63 13 165 445 633 359 Saprolegnia diclina VS20 40S ribosomal protein S8 mRNA blastn 3266 159 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
17421004 17421004 PRJNA857143_S_NODE_101534_length_311_cov_3.155462_g100441_i0 PRJNA857143 101534 311 3.155462 9.81348682 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 189 2.12e-43   NTclustered gi|813141452|ref|XM_012343573.1| 695850 g100441 i0 83.019 8.33440514469453 212 32 68 4 96 305 767 558 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L8 mRNA blastn 2592 189 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
17812742 17812742 PRJNA857143_S_NODE_121814_length_290_cov_7.898618_g120721_i0 PRJNA857143 121814 290 7.898618 22.9059922 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 167 9.19e-37   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g120721 i0 79.675 61.3241379310345 246 38 83 10 5 244 219 458 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 17784 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
19969505 19969505 PRJNA857143_S_NODE_113636_length_298_cov_3.835556_g112543_i0 PRJNA857143 113636 298 3.835556 11.42995688 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 119 2.69e-22   NTclustered gi|675192356|ref|XM_008906815.1| 761204 g112543 i0 88.66 30.4463087248322 97 11 33 0 65 161 416 320 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 9073 119 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
23796297 23796297 PRJNA857143_S_NODE_49139_length_398_cov_2.350769_g48046_i0 PRJNA857143 49139 398 2.350769 9.35606062 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 156 2.82e-33   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g48046 i0 90 6.5 120 12 30 0 279 398 935 816 A.klebsiana calmodulin gene, complete cds blastn 2587 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
23796381 23796381 PRJNA857143_S_NODE_56659_length_380_cov_3.977199_g55566_i0 PRJNA857143 56659 380 3.977199 15.1133562 Peronospora tabacina 230439 SAR_Eukaryotes SAR_Eukaryotes 388 2.4299999999999997e-103   NTclustered gi|948299304|ref|NC_028331.1| 230439 g55566 i0 85.753 97.5973684210526 372 47 97 5 1 367 2395 2025 Peronospora tabacina isolate 968-J2 mitochondrion, complete genome blastn 37087 388 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora tabacina
23796495 23796495 PRJNA857143_S_NODE_68319_length_357_cov_5.140845_g67226_i0 PRJNA857143 68319 357 5.140845 18.35281665 Halophytophthora thermoambigua 2874305 SAR_Eukaryotes SAR_Eukaryotes 169 3.22e-37   NTclustered gi|2213903340|gb|OK091352.1| 2874305 g67226 i0 77.972 76.6610644257703 286 51 79 10 75 357 416 140 Halophytophthora sp. MHJ-2021h isolate BD630 from Portugal heat shock protein 90 (hsp90) gene, partial cds blastn 27368 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Halophytophthora Halophytophthora thermoambigua
25069333 25069333 PRJNA857143_S_NODE_142240_length_273_cov_1.060000_g141147_i0 PRJNA857143 142240 273 1.06 2.8938 Halophytophthora avicenniae 289610 SAR_Eukaryotes SAR_Eukaryotes 180 1.1e-40   NTclustered gi|1229862066|gb|KY788554.1| 289610 g141147 i0 82.609 76.003663003663 207 32 75 4 4 208 730 526 Halophytophthora avicenniae isolate CBS 188.85 heat shock protein 90 (Hsp90) gene, partial cds blastn 20749 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Halophytophthora Halophytophthora avicenniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;