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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA857143 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
842953 842953 PRJNA857143_S_NODE_115481_length_297_cov_0.946429_g114388_i0 PRJNA857143 115481 297 0.946429 2.81089413 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.028   NTclustered gi|1557394408|emb|LR031564.1| 45931 g114388 i0 100 0.0942760942760943 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3394626 3394626 PRJNA857143_S_NODE_31523_length_458_cov_2.129870_g30431_i0 PRJNA857143 31523 458 2.12987 9.7548046 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.044   NTclustered gi|1557394408|emb|LR031564.1| 45931 g30431 i0 100 0.0611353711790393 28 0 6 0 431 458 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
5946827 5946827 PRJNA857143_S_NODE_174225_length_251_cov_0.876404_g173132_i0 PRJNA857143 174225 251 0.876404 2.19977404 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g173132 i0 100 0.111553784860558 28 0 11 0 224 251 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8496753 8496753 PRJNA857143_S_NODE_201427_length_215_cov_10.633803_g200334_i0 PRJNA857143 201427 215 10.633803 22.86267645 Caenorhabditis elegans 6239 Nematoda Nematoda 171 5.02e-38   NTclustered gi|687866912|emb|LK928898.1| 6239 g200334 i0 92.437 55.5860465116279 119 9 55 0 72 190 5249 5367 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000480 blastn 11951 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8888286 8888286 PRJNA857143_S_NODE_198607_length_233_cov_2.437500_g197514_i0 PRJNA857143 198607 233 2.4375 5.679375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 145 3.34e-30   NTclustered gi|687865697|emb|LK927572.1| 6239 g197514 i0 90.741 89.8025751072961 108 10 46 0 123 230 121417 121524 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000039 blastn 20924 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13597516 13597516 PRJNA857143_S_NODE_192611_length_243_cov_0.917647_g191518_i0 PRJNA857143 192611 243 0.917647 2.22988221 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g191518 i0 100 0.11522633744856 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13598116 13598116 PRJNA857143_S_NODE_74671_length_347_cov_1.138686_g73578_i0 PRJNA857143 74671 347 1.138686 3.95124042 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.033   NTclustered gi|1557394408|emb|LR031564.1| 45931 g73578 i0 100 0.0806916426512968 28 0 8 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17421237 17421237 PRJNA857143_S_NODE_123914_length_289_cov_0.990741_g122821_i0 PRJNA857143 123914 289 0.990741 2.86324149 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.027   NTclustered gi|1557394408|emb|LR031564.1| 45931 g122821 i0 100 0.0968858131487889 28 0 10 0 262 289 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18695262 18695262 PRJNA857143_S_NODE_28935_length_470_cov_16.400504_g27843_i0 PRJNA857143 28935 470 16.400504 77.0823688 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.013   NTclustered gi|1831517864|ref|NM_001136422.4| 6239 g27843 i0 100 0.246808510638298 29 0 6 0 403 431 36 8 Caenorhabditis elegans FIP (Fungus-Induced Protein) Related (fipr-2), partial mRNA blastn 116 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19969870 19969870 PRJNA857143_S_NODE_14996_length_586_cov_3.592593_g13945_i0 PRJNA857143 14996 586 3.592593 21.05259498 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g13945 i0 96.875 0.0546075085324232 32 1 5 0 555 586 54 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
19971103 19971103 PRJNA857143_S_NODE_88276_length_327_cov_2.960630_g87183_i0 PRJNA857143 88276 327 2.96063 9.6812601 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.031   NTclustered gi|1557394408|emb|LR031564.1| 45931 g87183 i0 100 0.0856269113149847 28 0 9 0 300 327 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
22520600 22520600 PRJNA857143_S_NODE_24998_length_493_cov_21.554762_g23909_i0 PRJNA857143 24998 493 21.554762 106.26497666 Necator americanus 51031 Nematoda Nematoda 71.3 1.33e-7   NTclustered gi|2707583078|ref|XM_013447403.2| 51031 g23909 i0 100 2.3894523326572 38 0 8 0 255 292 746 709 Necator americanus uncharacterized protein (RB195_001097), partial mRNA blastn 1178 71.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
24186936 24186936 PRJNA857143_S_NODE_86639_length_329_cov_4.003906_g85546_i0 PRJNA857143 86639 329 4.003906 13.17285074 Opisthokonta 33154 Nematoda Nematoda 65.8 3.98e-6   NTclustered gi|11094934|gb|AC084484.1|CBRG03N05 6238 g85546 i0 97.368 10.8814589665653 38 1 12 0 1 38 5704 5741 Caenorhabditis briggsae cosmid G03N05, complete sequence blastn 3580 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;