RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA857143 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6339275 6339275 PRJNA857143_S_NODE_195685_length_241_cov_2.785714_g194592_i0 PRJNA857143 195685 241 2.785714 6.71357074 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|470253359|ref|XM_004359721.1| 261658 g194592 i0 100 0.232365145228216 28 0 12 0 35 62 26 53 Cavenderia fasciculata N2227-like domain-containing protein (DFA_01813), partial mRNA blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8497138 8497138 PRJNA857143_S_NODE_59727_length_374_cov_1.554817_g58634_i0 PRJNA857143 59727 374 1.554817 5.81501558 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.01   NTclustered gi|66800670|ref|XM_629259.1| 352472 g58634 i0 96.875 0.0855614973262032 32 1 9 0 302 333 3105 3074 Dictyostelium discoideum AX4 chromo domain-containing protein (DDB_G0293012) mRNA, complete cds blastn 32 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
11047418 11047418 PRJNA857143_S_NODE_194289_length_242_cov_1.337278_g193196_i0 PRJNA857143 194289 242 1.337278 3.23621276 uncultured myxomycete 385478 Evosea other_Eukaryota 424 4.01e-114   NTclustered gi|1133508007|emb|LT670649.1| 385478 g193196 i0 98.347 100.334710743802 242 3 100 1 1 242 24 264 Uncultured myxomycete partial 18S rRNA gene, isolate OTU429 blastn 24281 424 1 Eukaryota Amoebozoa   Evosea Eumycetozoa       uncultured myxomycete
12323427 12323427 PRJNA857143_S_NODE_58970_length_375_cov_4.043046_g57877_i0 PRJNA857143 58970 375 4.043046 15.1614225 Phalansterium solitarium 136499 Evosea other_Eukaryota 198 4.33e-46   NTclustered gi|300078500|gb|GU001162.1| 136499 g57877 i0 77.839 36.1626666666667 361 53 92 20 30 375 3007 3355 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13561 198 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;