RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA857143 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5947142 5947142 PRJNA857143_S_NODE_22265_length_512_cov_119.498861_g21179_i0 PRJNA857143 22265 512 119.498861 611.83416832 Vannellidae sp. 2491907 Discosea other_Eukaryota 255 3.5600000000000003e-63   NTclustered gi|1523769315|gb|MH535957.1| 2491907 g21179 i0 79.644 35.921875 393 51 75 23 20 401 325 699 Vannellidae sp. strain 151-1SVA_C2 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 18392 255 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   Vannellidae sp.
9771375 9771375 PRJNA857143_S_NODE_153288_length_264_cov_1.633508_g152195_i0 PRJNA857143 153288 264 1.633508 4.31246112 Paravannella minima 1443144 Discosea other_Eukaryota 182 2.95e-41   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g152195 i0 81.304 19.219696969697 230 37 86 4 4 230 52418 52192 Paravannella minima mitochondrion, complete genome blastn 5074 182 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
12322543 12322543 PRJNA857143_S_NODE_154110_length_263_cov_2.768421_g153017_i0 PRJNA857143 154110 263 2.768421 7.28094723 Acanthamoeba tubiashi 65665 Discosea other_Eukaryota 115 3.02e-21   NTclustered gi|28194601|gb|AF479545.1| 65665 g153017 i0 88.542 32.4980988593156 96 9 59 2 155 249 1191 1285 Acanthamoeba tubiashi strain OC15C 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 8547 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba tubiashi
18695212 18695212 PRJNA857143_S_NODE_23755_length_501_cov_34.289720_g22668_i0 PRJNA857143 23755 501 34.28972 171.7914972 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 200 1.6499999999999999e-46   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g22668 i0 79.514 14.5389221556886 288 53 57 5 113 397 318 34 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 7284 200 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21637382 21637382 PRJNA857143_S_NODE_4357_length_914_cov_14.350773_g3661_i0 PRJNA857143 4357 914 14.350773 131.16606522 Paramoeba 200890 Discosea other_Eukaryota 182 1.13e-40   NTclustered gi|218218324|gb|EU884491.1| 308475 g3661 i0 88.235 16.7428884026258 153 16 17 2 627 777 244 396 Paramoeba branchiphila clone SM53 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15303 182 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;