RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA857143 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4672982 4672982 PRJNA857143_S_NODE_88164_length_327_cov_4.255906_g87071_i0 PRJNA857143 88164 327 4.255906 13.91681262 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 239 2.1999999999999993e-58   NTclustered gi|2893356046|emb|OZ220469.1| 3069543 g87071 i0 80.606 29.5443425076453 330 46 98 11 6 327 2202080 2202399 MAG: Phototrophicaceae bacterium isolate 149760b3-584d-4ebc-81cd-1236e649b30c genome assembly, chromosome: 1 blastn 9661 239 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium
5947506 5947506 PRJNA857143_S_NODE_63205_length_367_cov_1.707483_g62112_i0 PRJNA857143 63205 367 1.707483 6.26646261 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 346 1.4299999999999999e-90   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g62112 i0 83.957 275.920980926431 374 47 99 8 5 367 4992830 4993201 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 101263 346 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
7222049 7222049 PRJNA857143_S_NODE_23526_length_503_cov_3.200000_g22439_i0 PRJNA857143 23526 503 3.2 16.096 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 346 2.01e-90   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g22439 i0 80.421 100.085487077535 475 76 93 14 37 502 597203 597669 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 50343 346 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
19970429 19970429 PRJNA857143_S_NODE_200996_length_227_cov_2.019481_g199903_i0 PRJNA857143 200996 227 2.019481 4.58422187 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 302 1.82e-77   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g199903 i0 92.788 180.118942731278 208 15 92 0 13 220 2827816 2828023 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 40887 302 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;