RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA857143 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
843660 843660 PRJNA857143_S_NODE_183561_length_247_cov_0.896552_g182468_i0 PRJNA857143 183561 247 0.896552 2.21448344 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 52.8 0.022   NTclustered gi|2874254091|emb|OY970174.1| 171953 g182468 i0 100 0.11336032388664 28 0 11 0 116 143 4033312 4033285 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
3394201 3394201 PRJNA857143_S_NODE_169143_length_253_cov_1.077778_g168050_i0 PRJNA857143 169143 253 1.077778 2.72677834 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 187 6.0299999999999984e-43   NTclustered gi|2874253700|emb|OY969426.1| 2651171 g168050 i0 81.739 111.379446640316 230 37 89 5 1 226 3767735 3767963 MAG: Thermoanaerobaculia bacterium isolate MFD02979.bin.c.1 genome assembly, chromosome: 1 blastn 28179 187 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
8496708 8496708 PRJNA857143_S_NODE_195887_length_241_cov_2.166667_g194794_i0 PRJNA857143 195887 241 2.166667 5.22166747 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 154 5.78e-33   NTclustered gi|2893358436|emb|OZ220728.1| 2910147 g194794 i0 81.915 0.780082987551867 188 29 77 5 31 216 3722110 3721926 MAG: Vicinamibacterales bacterium isolate 73bbec36-abbb-48ff-8f96-0d8513c84f17 genome assembly, chromosome: 1 blastn 188 154 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
11046965 11046965 PRJNA857143_S_NODE_152349_length_265_cov_1.218750_g151256_i0 PRJNA857143 152349 265 1.21875 3.2296875 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 303 6.06e-78   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g151256 i0 87.5 165.841509433962 264 31 99 2 1 263 4534604 4534342 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 43948 303 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
13598365 13598365 PRJNA857143_S_NODE_99191_length_314_cov_1.618257_g98098_i0 PRJNA857143 99191 314 1.618257 5.08132698 Geothrix sp. 1962974 Bacteria Bacteria 56.5 0.002   NTclustered gi|2515262989|gb|CP126625.1| 1962974 g98098 i0 100 0.184713375796178 30 0 10 0 52 81 1874516 1874545 MAG: Geothrix sp. isolate L227-G1 chromosome, complete genome blastn 58 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;