RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA857143 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11046774 11046774 PRJNA857143_S_NODE_13069_length_616_cov_2.384899_g12038_i0 PRJNA857143 13069 616 2.384899 14.69097784 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 1122 0   NTclustered gi|221326511|gb|FJ544576.1| 590745 g12038 i0 99.513 100.027597402597 616 3 100 0 1 616 1160 1775 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 61617 1122 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus
25070094 25070094 PRJNA857143_S_NODE_35320_length_441_cov_16.021739_g34228_i0 PRJNA857143 35320 441 16.021739 70.65586899 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 745 0   NTclustered gi|221326511|gb|FJ544576.1| 590745 g34228 i0 99.274 90.2222222222222 413 2 93 1 30 441 2489 2077 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 39788 745 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;